Basic Information

Insect: Acleris holmiana
Gene Symbol: -
Assembly: GCA_949316455.1
Location: OX438789.1:3234449-3244113[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.3e-05 0.0039 18.8 2.4 1 23 70 92 70 92 0.95

2 13 0.0019 0.22 13.3 1.9 1 23 99 121 99 121 0.97

3 13 1.2e-07 1.4e-05 26.5 3.6 1 23 159 181 159 181 0.99

4 13 2.6e-05 0.0031 19.1 0.5 1 23 188 210 188 210 0.98

5 13 1.9e-07 2.3e-05 25.8 2.7 1 23 258 280 258 280 0.99

6 13 9.2e-05 0.011 17.4 0.3 1 23 287 309 287 309 0.95

7 13 9.2e-07 0.00011 23.7 2.0 1 23 344 366 344 366 0.99

8 13 7.9e-06 0.00093 20.8 1.9 1 23 373 395 373 395 0.98

9 13 6.9e-07 8.1e-05 24.1 2.0 1 23 401 423 401 423 0.99

10 13 1.1e-05 0.0013 20.3 0.9 2 23 430 451 429 451 0.98

11 13 1.6e-07 1.9e-05 26.1 0.5 1 23 457 479 457 479 0.98

12 13 3.6e-06 0.00042 21.9 1.2 1 23 485 507 485 507 0.98

13 13 3.5e-06 0.00041 21.9 1.4 1 23 513 535 513 535 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.3e-05	0.0039	18.8	2.4	1	23	70	92	70	92	0.95
2	13	0.0019	0.22	13.3	1.9	1	23	99	121	99	121	0.97
3	13	1.2e-07	1.4e-05	26.5	3.6	1	23	159	181	159	181	0.99
4	13	2.6e-05	0.0031	19.1	0.5	1	23	188	210	188	210	0.98
5	13	1.9e-07	2.3e-05	25.8	2.7	1	23	258	280	258	280	0.99
6	13	9.2e-05	0.011	17.4	0.3	1	23	287	309	287	309	0.95
7	13	9.2e-07	0.00011	23.7	2.0	1	23	344	366	344	366	0.99
8	13	7.9e-06	0.00093	20.8	1.9	1	23	373	395	373	395	0.98
9	13	6.9e-07	8.1e-05	24.1	2.0	1	23	401	423	401	423	0.99
10	13	1.1e-05	0.0013	20.3	0.9	2	23	430	451	429	451	0.98
11	13	1.6e-07	1.9e-05	26.1	0.5	1	23	457	479	457	479	0.98
12	13	3.6e-06	0.00042	21.9	1.2	1	23	485	507	485	507	0.98
13	13	3.5e-06	0.00041	21.9	1.4	1	23	513	535	513	535	0.98

Sequence Information

Coding Sequence: ATGTCATTCCTGAAAATAAAACGGCAAAAGGCATGTCAAAACGAATCCAATAAGCCAAACAAGTCACCTACACAAGTGGAGGAGTTACAAGACCCAGCAAAAAACAATTTTGGCAAAGCTCCCACAACTAATCCTGTGAAGCTGGCGGCTGAAAGAGAAATGTCAGATACTGAGGTGTGTTCTGTTCAAATTGACGTGCAAAACTTACACGCATGTCAGATTTGTAAGAAAACATTCTCTGAGAAAACAAGCCTTACTAGTCACATGGGCTCACATAAAAGTGAAGCAATAACTTACGCATGTGATATTTGTAGGAAACATTTTCCAAAGTTGATTCTCATGCAGAAACATAGACGACTTCACACAGCTGAAGCCAGCAAGGGGTGCGCTGTAAACTCTGGTGATAGCCTAAGCTCGAATAGCAAAGATAGGTTAGATTCCGAGAGTTCTGTTCAAAATGACGATCAAGAATTCTACACTTGCCAGACTTGTCAGAAAACATTTGAAAGGAAATCGAGTCTAACTAATCACATGCGCTCACATAAGGGTGAAGAAATAACTTACACATGTGATATTTGTGGAAAACAATTTGCAAAGTTGATTGCTATGCAGAAACATAGAAGACTTCACACGGCTGCCTCAACGAATCCTCTAAAGTCGACCCCTGAACCCAGCAATGGATGCCCTGAAATCACCGACGGCAACCTCAACTCGAGTAGCAAAGATATGTTGGATTCCGAGTGCTCTGTTCAAATTGATGATCAAGGCTTTTACACATGTCAGATTTGTCAGAAGAAATTTGACAGGAAATCTAGTCTTACTAATCACGTACGCACGCATCTGAGTCCTGAAATGACTTACGCGTGTGATATTTGTGGGAAACGTTTTGCGAGGTTGACTACCATGCAGCAACATAAAGGAGTTCATACAGTTGCATCAACTAAGCCTGCGGCGCCCCCGCGACCTGAACCCAGTAATGAGTGCTTCGAGACCTCTGACGACAACCTCAGCTGGACCAGTGAAGAAACGTACACGTGCCAGATTTGTCAGAGATCATTCGACAAGAAATCTAGCCTATCTAATCACATCCGCTCACATAACAGTGAAGACATAACTTACCCATGTGATATTTGCGGAAAACGTTTTTCACAGTTGACTACAGTGCAGCACCATAGACGACTTCACACAGGTGAAACGCCTTATCCTTGTAAAGTATGTAAGAAACGGTTTCGGACCTCAGCCGCTCTATCGCGCCATAAACGCACACACACTGGAGTCAATATTCAAAAATGCGAATACTGCAATAAGGAGTTTGTATATAACTTTGCTTTCGAAACGCACATGCGAATCCACACAGGAGAAAAGCCTTTCCCATGTGATGTttgtaaaaaaacgttttcCCAAACCTCTGCGTTGAATCGCCATATGCTCATCCACAAAGCGATAGCTCCATTCTCCTGCGATCTCTGTCCGAGAAAGTTTAGACAACGGAGTGAAGTGAAAGTTCATATGAGGAATCACACGGGGGAGAGACCTTACCCCTGTAAAAGTTGTAATAAAGGATTTATGCAAAAATCTCACCTAATTGCTCACATGAAAGCTCATTTAAAGAAGGAACGAAAGCGCAAGCCGGTGACATCCAAAGCAGCCGCCGTAAAAGTCAAAGCTACGCCGGAGGTAGTGCTTGTGAAGGAGGAGAGGGAGGAAATGGAGGAGTTATGTGAAGAGCCAGAGTGGGCAGACACACCGCAGGAGCCAGTGCGTGTTAAAGAGGAGAAATTGGAGCCCCGTTCAATGTCAAAGGAGGCGCACGAAGAATTTTTGTTTGAAGGTAACTATGAATAA
Protein Sequence: MSFLKIKRQKACQNESNKPNKSPTQVEELQDPAKNNFGKAPTTNPVKLAAEREMSDTEVCSVQIDVQNLHACQICKKTFSEKTSLTSHMGSHKSEAITYACDICRKHFPKLILMQKHRRLHTAEASKGCAVNSGDSLSSNSKDRLDSESSVQNDDQEFYTCQTCQKTFERKSSLTNHMRSHKGEEITYTCDICGKQFAKLIAMQKHRRLHTAASTNPLKSTPEPSNGCPEITDGNLNSSSKDMLDSECSVQIDDQGFYTCQICQKKFDRKSSLTNHVRTHLSPEMTYACDICGKRFARLTTMQQHKGVHTVASTKPAAPPRPEPSNECFETSDDNLSWTSEETYTCQICQRSFDKKSSLSNHIRSHNSEDITYPCDICGKRFSQLTTVQHHRRLHTGETPYPCKVCKKRFRTSAALSRHKRTHTGVNIQKCEYCNKEFVYNFAFETHMRIHTGEKPFPCDVCKKTFSQTSALNRHMLIHKAIAPFSCDLCPRKFRQRSEVKVHMRNHTGERPYPCKSCNKGFMQKSHLIAHMKAHLKKERKRKPVTSKAAAVKVKATPEVVLVKEEREEMEELCEEPEWADTPQEPVRVKEEKLEPRSMSKEAHEEFLFEGNYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -