Ahol038340.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acleris holmiana
Gene Symbol
-
Assembly
GCA_949316455.1
Location
OX438789.1:3421420-3428085[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 0.00049 0.057 15.1 1.8 2 23 13 35 12 35 0.92
2 41 0.00068 0.08 14.7 3.8 1 23 40 63 40 63 0.96
3 41 0.34 40 6.2 4.6 1 23 144 167 144 167 0.96
4 41 0.36 42 6.1 0.0 3 23 196 217 194 217 0.94
5 41 0.034 4 9.3 0.3 2 23 240 262 239 262 0.94
6 41 0.12 14 7.7 0.1 3 23 269 290 267 290 0.93
7 41 0.066 7.8 8.4 0.5 1 23 295 318 295 318 0.96
8 41 0.036 4.2 9.3 0.1 2 23 324 346 323 346 0.93
9 41 0.00027 0.031 16.0 4.8 1 23 350 373 350 373 0.97
10 41 0.0042 0.49 12.2 1.5 2 23 380 401 379 401 0.97
11 41 0.18 21 7.1 2.8 1 23 440 462 440 462 0.96
12 41 0.011 1.3 10.9 0.9 2 23 490 512 489 512 0.95
13 41 0.043 5 9.0 1.0 2 23 533 555 532 555 0.94
14 41 0.073 8.6 8.3 1.3 1 23 622 645 622 645 0.91
15 41 7.8 9.1e+02 1.9 0.1 2 23 672 694 671 694 0.95
16 41 5.1 5.9e+02 2.5 1.3 1 23 741 763 741 763 0.94
17 41 0.01 1.2 11.0 0.7 2 23 789 811 788 811 0.95
18 41 1.2 1.4e+02 4.5 0.1 2 23 832 854 831 854 0.92
19 41 0.24 28 6.7 1.6 2 23 860 882 859 882 0.94
20 41 5.6 6.5e+02 2.4 0.1 2 23 1037 1060 1036 1060 0.91
21 41 0.0096 1.1 11.1 0.2 2 23 1066 1088 1065 1088 0.94
22 41 0.026 3.1 9.7 0.2 2 23 1094 1116 1093 1116 0.92
23 41 0.012 1.5 10.7 0.9 1 23 1121 1144 1121 1144 0.93
24 41 0.00073 0.086 14.6 3.5 1 23 1148 1171 1148 1171 0.97
25 41 0.0061 0.72 11.7 0.7 2 23 1178 1199 1177 1199 0.96
26 41 0.048 5.6 8.9 2.6 1 23 1205 1227 1205 1227 0.97
27 41 0.0096 1.1 11.1 0.3 1 23 1265 1287 1265 1287 0.95
28 41 0.0041 0.48 12.2 0.1 3 23 1316 1337 1314 1337 0.90
29 41 1.7 2e+02 4.0 0.8 2 23 1358 1380 1357 1380 0.94
30 41 0.003 0.36 12.6 4.3 2 23 1386 1408 1385 1408 0.96
31 41 0.0011 0.13 14.1 0.6 1 23 1413 1436 1413 1436 0.94
32 41 0.0014 0.17 13.7 1.7 2 23 1439 1461 1438 1461 0.96
33 41 0.013 1.6 10.6 4.6 1 23 1543 1566 1543 1566 0.97
34 41 0.31 36 6.3 0.5 2 23 1594 1616 1593 1616 0.94
35 41 0.00028 0.033 15.9 0.2 1 23 1638 1661 1638 1661 0.91
36 41 3.1e-06 0.00036 22.1 0.5 3 23 1668 1689 1666 1689 0.95
37 41 0.0008 0.093 14.5 0.4 1 23 1695 1718 1695 1718 0.96
38 41 0.0012 0.14 13.9 0.1 3 23 1725 1746 1724 1746 0.92
39 41 0.00049 0.057 15.1 4.2 1 23 1750 1773 1750 1773 0.97
40 41 0.0018 0.21 13.4 0.6 2 23 1780 1801 1779 1801 0.97
41 41 0.058 6.8 8.6 1.6 1 23 1807 1829 1807 1829 0.96

Sequence Information

Coding Sequence
ATGCACGTGCGGAAAAATCACATGGAAAAACTCCTGCCTTGCGAGAAGTGCGATAGAAGTTTCAATAAAAAGTCTGAACTGATGGCGCACTGCCGAATTTATCATAGAAGAGTGGGCTTTCAGTGCGTCAAGTGCGAGCGTTGTTTTAGGACTACTAGCTTGTTGCGACTCCATCTCATGAACACTCACGGCTCATCGGAGCGGAAATGTACTAGGATAATATCTAGTTTGAGAGGTCGGAGTTCACATCATTACCTTAGCATTGGTTCTAAAGACGTCTTGACGGAGGGGGAATTAGAAGACTGTGAAATCGAAACGCAACGTAAACGATTACGCGAGAGGAACGCCATAGCCAAGCGTAACCGAGAAAACATTGCGTGCATTCTAAACATGACGACTGCTATACCTTTTAAGTATTATCAAAACAGATTTACATGTTTCCATTGCTCGAGAGACTTTAATGAGCACGAGGACATGCGGACACACACGTTAATGGAACACCCGTTTTATGATCTAGAGAGAAAGTGCCCTAAGTCTTTGAAAGGTGTAAACTTGTGCATCAAACTAGATATATCTTCGTTGGCCTGTAGAGTTTGCTTTGAGCCGTTTAACAATTTCGAGTTGCTAGTAgatcatttaattattaaccaTAAAGCCAATTATGATAAAAACGTCACAGGCATTATGCAACCATTCAGGCTTGAGAAATATAACATGTCGTGTCCACTCTGCCCACAGTCGTTTTCTTATTTCAACATATTACTTAAACACATGAACCAAGAGCATTCTCCTAAAACGCATCTATGTTCGAATTGCGGCGCGGTATTCTCTAGCGAAGCTATATTGACCATGCATATAGCGCGTTTACACGGACCTAAAGTCTTCAAATGTAATGAATGTAACATAGAATTGAATTCCGcgctaaaattaaaaagtcatagaGCCAAAATGCATGGCGTTCGCGAGGTCCCTTGCCAGAAGTGTCCGGAAAAGTTCCCCTCTGAGTATGAACGGCAAAAACATTTGATCCAAGCGCATGATATAGGACACAAGTGTTCTTTTTGCGGGAAAATGTTCGTTAAGAACTCGTTTATGAGGAACCATATACGCCGCACGCACATGGAGGAGAAAAACGTCCAATGTACCGTCTGCAATCATAAATTCTTCGACAATATTCTTCTGAAGATACACATGGTTAAGCACATAGATTCAAATCAGCTAAGAAAGGCATTCGAGAGAGCGACTAGTCAACGCCGCCATAATCTGAAAATACTGTTTCACAACACAACCGTGATCCCATTCATATGGCGCACCATATACACTTGTTTCTATTGCTCTAAGAACTTTCTGGAACACGCAGAACTCAAGAGACACACCATAGAGCACGGGAAGTGTACCATGCAAGAGCTCTCCTTTAGGCGCTTGAAATCGTTTGACGTCGTGTTAAAAATAGATGTGTCGGAAACGCGTTGCTTGGTATGCAATGAGTCTTGCAAAGATTTAGAAGAATTACTCAAGCACTTGGTTACTATGCATGAGTTGGACTACAAACTAGAAGTTTATATGCATATGGAACAGTATAACTTGAAAGATCTTAAATGCGCGCACTGCCAGGAACAGTTCATATATGCATCGTTTCTTGTAAACCACACGCAGGAAAATCACCCAGTGAAGGCATGGTTTTGCTGCGAGTGCTTAATAATATGTAACAGTGTTCCCAAGGAGCACTCACATAGTCGGAAAAAAACAACTAATGCCAGCGATGACCTTTCAAACATGAAGAAAACGTTATCGTGCCTTTTCAATATGTCTACCGTCATCCCGTTTAAGTTCAGCGGGAACAAAAAGACACGGCTGGTAAAATATGTTTGCTTTTTCTGCAAAGAGATGTTTCCGCAATATGATTTTCTGCTTAAGCATACTGTTAACCAACATAAAGACTGTGACCCGCACAGTATGGCAATAGCTATACTGAAAATGAACACTAAAGTTAAAGTCGATGTTACTAGTATTTCGTGTAGAATCTGTCTTGAGTCTGTAGGCACCTTGAAAAATATCTTTGAGCATTTAATAACTGAACATAAAGCTAATTGCGACGAAACTTTCATTGATGATAATCCGCACAAAAAGGCCTGCGAATTAAGAACAGCGAGACGCCGACAGAATCTGCAAACGCTGTTTTGCAGTTCAAGTGTCATACCTTTTGAATGGCGAAAGCTATTTGCCTGTAGTTACTGTAACGATAGCGGGTTCGAGCACGAGGAACTCGTCAAACATACCAAGTCACACGATAAAAGTTTCATCAAGGAGTTTTTATCCAAACTGCGGTCAAAAGTTACGCTTAAAATAGACGTGTCTGATATAACGTGCGAACTGTGCGACCATAACTTCCAAAGCTTAGACGCTCTGACTAACCATCTAGTTACGAAACATAATTTGAAATATGACAGCAAACTGCCATTGAACGTTGAACAGTACAAGTTGGTAGACCTGAGCTGTCCGTTGTGTAAAGAGAATTTTTCGGAAATGGAAATTCTGAACGTCCATGTCAGTACTAGGCATGCAGTTCATAATTTACAGTGTGAACTTTGTTCAGAAATGTTTCAGAAGAAGAAAGACTGGAAGTTGCACAAGAAATTGTTCCATTCAGTTGAGTATGATTTACAATGTGTGAAAGAGGAACCTGGAATAGGCGACGAAATCAAAACCTTAAATGTTGACGCAGTGGAAAAGAAACGAATAGCTAAGCTTAGACGCGAGAACATTGCTTGTATTCTGAACATGTCAACGGCGACGCCTTTCAAATATTGCTGGAATCGTTTTCGTTGTTTTTATTGTGCGAAAAACCACACGGAATTTGAACCTATTCGAAATCATATCGCTACTAAACATCCCTTCTGCGACCCATCAGGAAACGCTATGAAATTAATTAAAGGGACAGATGCAATCGTCAAAATAGACATCACTGCCCTCGCTTGCAAAATATGTTGCATGGCGATAACTGATCTGGACGCTCTTTCCGATCATTTGATTTCGAATcacaaaacaaaatatgacaAATCCATGATTAGCATAGTTCAACCTTTTAAAATTGCAAAGGACAACATGGTGTGTCCGCTCTGTCCTAACGTCGCGTTTAGGTATTTTGTGAAACTTCTAGAGCACATGAATGAAAGTCACTCTGACAATAACGTGGTTTGTGTGTACTGTGGCCAAACTTTTAGGAACACGCCGTCTTACAGGGGACATTTAGCCAGGTATCACCGTTCTAGCGCGTGCAAGTGCCCAGACTGCGATCTAGAGCTACCTAACGTATCGAAGCTCACGGCGCACAGGGCCAACGTCCACGGCGCGAAGACATTCAAATGCTCCAAATGTAACGAGAAGTTCGCTACAGTATACCTTAGACAAAAGCACCTCATAGACGCTCATGGATCCGGCCACAAATGCTCCTTCTGTGATCGATTGTTCGCGCGGAACTCGTACATGAAGGACCACATTCGAAGATTACATTTCAAAGAAAAGAATGTAGAGTGCTCTGTATGTAAGGAGAAGTTCTTCGACAAAACTCGCCTGAATATACATATGGTAAAGCATATTGGAGAGAGGAACTACCACTGTGATACTTGCGGCAAAACTTTTCTATGGAAGAAAAATTTACGTGGTCACATGTCTTCGCATAATCATAAAATTGGACTGAAAAACGTGAAAAGCGCCAATTATCGCAAGAGGAGAAATCTGCaaataattttcaacaacaccacGATGATACCGTTCAAATGGCGGCAAAAATATCTTTGTTTTTACTGTGGCGAGGACTTGGTGGATTATGACATGTTGAGAAAACACACGCGAGCGCACGGCGCCTGCGCCATCACGGACCGCGCCCTCAGCCGCGTCTCGGGCTCCGATATTGAAATCAAAGTAGACGTTTCCGACACAATATGTGAAATATGCGATGAGACTTTTACCAACTTCGACGAATTAATCGGACATTTAGtccaaaaacataacttaccaTACGACGAGCACTCAGACCTTATTATAATGAAGTACAGATTGGCCGATCTCAAATGTTTATTGTGCGAAGACAGCTTTAATCATTTTGGTAAACTTATAGTACACGTGAACAACAACCATCCCATGAAATTCCTCTCGTGTGATGTCTGCCACCAGAAATTTAACAAGCATAGAGATTTGACTGCCCATCTCAGATCTTACCACAAAAAGGAAGGTTATAACTGCACTCAATGCGGAATTAGCTTTCCTACTAATTGGGCACTTAGCAATCACAAATTTAAATCACACTCATCAGTGTGTAATATTTGCTTTAAAAGTTTTACTTCTTCGGACAGGCGATTAAAACACATGAAATCGGAGCACATCGACGATGGGTCCCTACAATGTGGGTTTTGTCTGAAAACAATGAATACTAAACAAGGGTTCTTAAGACATGCAGCTCATTGCACCACTAGGAGTGATGAATCCAAAACTCAGCATATCATCGACGAAGTAGTCTCCATAGAGGACAGTGAAAGAAAGCCGAACGTCAAACAAATTAGGAACAATATCGCTTGCATACTTAACATGTCAACAGCCATTCCTTTTAAACATTTCATGAATAAATTTAGATGTTTCTATTGCACTAAACATTTTGTAGAATGCGACGAGCTCAAAGAGCACACCATGATCGAGCACCCGCACTGCGACTCCAAGTTTAAATCCATGAGATTACGCAATAGAGACGACATCTCCATCAAAATAGATACATCTACTTTATCTTGTAAGATTTGTTTCGAAACAATGAACGATTTAGATCATTTAATAGACCATCTGACATCTGAACATAAATCGCGATATGATAAGTCTGTAGAAATTAATGTACAACCTTACAAGTTAATAAAGGATAACTTTGCCTGTCCTTTTTGCGGTGAGGTCTTTAGGTACTTTAGCACTTTGCTTAGACACGTAAGTGGAGCTCACaccgaaaataaaacaatatgcaTGTATTGCGGCAAATCGTTTCGGACAAAACCAAATTTGCGGGCGCATATAGCGCGTCGTCATAAAGTAGGAAAGATTTATAAATGCGTAACATGTAAATTAGAATTCGCAAGAAAAATCGAACTTCGTACACATATGGGCAGAGTGCATGGCAATAAAATGGTGGACTGTCCGGAGTGCCCGGAGAAGTTCATATCTCAGTACACGATGCAGAGGCATCTGATCGACGCGCATGCCTCCGGGCACAGGTGCTCTTACTGCGGCAAACTGTTCACGAGAAACTCGTTCATGGACAACCACATTAGACGAACgcatttaaaagagaaaaacgTCCAGTGCTCGCTGTGCAAGGAAAGGTTTTTCGATTCTGCACTTCTTAAAATGCACATGGTGAAGCATATAGGAGAGCGGAACTTCCACTGTGACGTTTGCGGGAAGAAGTTTCTGTGGAAGAAAAACCTCCGCGGCCACATGGCTTCTCATGTTAAAAACGCTAATGCTCAAGCACTAACTTGA
Protein Sequence
MHVRKNHMEKLLPCEKCDRSFNKKSELMAHCRIYHRRVGFQCVKCERCFRTTSLLRLHLMNTHGSSERKCTRIISSLRGRSSHHYLSIGSKDVLTEGELEDCEIETQRKRLRERNAIAKRNRENIACILNMTTAIPFKYYQNRFTCFHCSRDFNEHEDMRTHTLMEHPFYDLERKCPKSLKGVNLCIKLDISSLACRVCFEPFNNFELLVDHLIINHKANYDKNVTGIMQPFRLEKYNMSCPLCPQSFSYFNILLKHMNQEHSPKTHLCSNCGAVFSSEAILTMHIARLHGPKVFKCNECNIELNSALKLKSHRAKMHGVREVPCQKCPEKFPSEYERQKHLIQAHDIGHKCSFCGKMFVKNSFMRNHIRRTHMEEKNVQCTVCNHKFFDNILLKIHMVKHIDSNQLRKAFERATSQRRHNLKILFHNTTVIPFIWRTIYTCFYCSKNFLEHAELKRHTIEHGKCTMQELSFRRLKSFDVVLKIDVSETRCLVCNESCKDLEELLKHLVTMHELDYKLEVYMHMEQYNLKDLKCAHCQEQFIYASFLVNHTQENHPVKAWFCCECLIICNSVPKEHSHSRKKTTNASDDLSNMKKTLSCLFNMSTVIPFKFSGNKKTRLVKYVCFFCKEMFPQYDFLLKHTVNQHKDCDPHSMAIAILKMNTKVKVDVTSISCRICLESVGTLKNIFEHLITEHKANCDETFIDDNPHKKACELRTARRRQNLQTLFCSSSVIPFEWRKLFACSYCNDSGFEHEELVKHTKSHDKSFIKEFLSKLRSKVTLKIDVSDITCELCDHNFQSLDALTNHLVTKHNLKYDSKLPLNVEQYKLVDLSCPLCKENFSEMEILNVHVSTRHAVHNLQCELCSEMFQKKKDWKLHKKLFHSVEYDLQCVKEEPGIGDEIKTLNVDAVEKKRIAKLRRENIACILNMSTATPFKYCWNRFRCFYCAKNHTEFEPIRNHIATKHPFCDPSGNAMKLIKGTDAIVKIDITALACKICCMAITDLDALSDHLISNHKTKYDKSMISIVQPFKIAKDNMVCPLCPNVAFRYFVKLLEHMNESHSDNNVVCVYCGQTFRNTPSYRGHLARYHRSSACKCPDCDLELPNVSKLTAHRANVHGAKTFKCSKCNEKFATVYLRQKHLIDAHGSGHKCSFCDRLFARNSYMKDHIRRLHFKEKNVECSVCKEKFFDKTRLNIHMVKHIGERNYHCDTCGKTFLWKKNLRGHMSSHNHKIGLKNVKSANYRKRRNLQIIFNNTTMIPFKWRQKYLCFYCGEDLVDYDMLRKHTRAHGACAITDRALSRVSGSDIEIKVDVSDTICEICDETFTNFDELIGHLVQKHNLPYDEHSDLIIMKYRLADLKCLLCEDSFNHFGKLIVHVNNNHPMKFLSCDVCHQKFNKHRDLTAHLRSYHKKEGYNCTQCGISFPTNWALSNHKFKSHSSVCNICFKSFTSSDRRLKHMKSEHIDDGSLQCGFCLKTMNTKQGFLRHAAHCTTRSDESKTQHIIDEVVSIEDSERKPNVKQIRNNIACILNMSTAIPFKHFMNKFRCFYCTKHFVECDELKEHTMIEHPHCDSKFKSMRLRNRDDISIKIDTSTLSCKICFETMNDLDHLIDHLTSEHKSRYDKSVEINVQPYKLIKDNFACPFCGEVFRYFSTLLRHVSGAHTENKTICMYCGKSFRTKPNLRAHIARRHKVGKIYKCVTCKLEFARKIELRTHMGRVHGNKMVDCPECPEKFISQYTMQRHLIDAHASGHRCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCSLCKERFFDSALLKMHMVKHIGERNFHCDVCGKKFLWKKNLRGHMASHVKNANAQALT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-