Ahol039821.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acleris holmiana
Gene Symbol
-
Assembly
GCA_949316455.1
Location
OX438790.1:10330583-10356794[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.0004 0.046 15.4 1.1 3 23 139 159 137 159 0.98
2 35 0.00057 0.066 14.9 0.3 1 23 165 187 165 187 0.98
3 35 5.1e-05 0.006 18.2 0.9 1 23 193 215 193 215 0.98
4 35 0.03 3.5 9.5 7.8 1 23 221 243 221 243 0.97
5 35 0.00017 0.02 16.6 6.4 1 23 249 271 249 271 0.98
6 35 1.5e-05 0.0018 19.9 2.8 1 23 277 300 277 300 0.97
7 35 5e-06 0.00058 21.4 4.1 1 23 306 328 306 328 0.98
8 35 9.6e-05 0.011 17.4 0.4 1 23 334 356 334 356 0.98
9 35 3.5e-05 0.0041 18.7 1.1 1 23 362 384 362 384 0.99
10 35 4.9e-05 0.0057 18.3 1.1 1 23 390 412 390 412 0.98
11 35 0.00079 0.093 14.5 0.8 1 23 418 440 418 440 0.99
12 35 3.1e-06 0.00036 22.1 0.6 1 23 446 468 446 468 0.98
13 35 0.015 1.8 10.5 1.1 1 19 474 492 474 493 0.95
14 35 0.0004 0.046 15.4 1.1 3 23 579 599 577 599 0.98
15 35 0.00057 0.066 14.9 0.3 1 23 605 627 605 627 0.98
16 35 5.1e-05 0.006 18.2 0.9 1 23 633 655 633 655 0.98
17 35 0.03 3.5 9.5 7.8 1 23 661 683 661 683 0.97
18 35 0.00017 0.02 16.6 6.4 1 23 689 711 689 711 0.98
19 35 1.5e-05 0.0018 19.9 2.8 1 23 717 740 717 740 0.97
20 35 5e-06 0.00058 21.4 4.1 1 23 746 768 746 768 0.98
21 35 9.6e-05 0.011 17.4 0.4 1 23 774 796 774 796 0.98
22 35 3.5e-05 0.0041 18.7 1.1 1 23 802 824 802 824 0.99
23 35 4.9e-05 0.0057 18.3 1.1 1 23 830 852 830 852 0.98
24 35 0.00079 0.093 14.5 0.8 1 23 858 880 858 880 0.99
25 35 3.1e-06 0.00036 22.1 0.6 1 23 886 908 886 908 0.98
26 35 0.0043 0.51 12.2 0.6 1 21 914 934 914 935 0.93
27 35 5.3e-05 0.0063 18.2 3.3 1 23 1018 1040 1018 1040 0.98
28 35 3.8e-06 0.00045 21.8 0.2 1 23 1046 1068 1046 1068 0.98
29 35 0.00045 0.053 15.3 4.5 1 23 1074 1096 1074 1096 0.98
30 35 0.0011 0.13 14.1 5.8 1 23 1102 1124 1102 1124 0.97
31 35 9.3e-05 0.011 17.4 4.0 1 23 1130 1152 1130 1152 0.98
32 35 1.5e-05 0.0018 19.9 0.7 1 23 1158 1180 1158 1180 0.98
33 35 0.015 1.7 10.5 9.2 1 23 1186 1208 1186 1208 0.97
34 35 5.5e-06 0.00065 21.3 0.4 1 23 1214 1236 1214 1236 0.98
35 35 7.5e-06 0.00088 20.9 0.7 1 23 1242 1264 1242 1264 0.99

Sequence Information

Coding Sequence
ATGTCAGTAGACCTGAATCTGGTTAAATGTGAGGTAAAGGTGGAACGTTTAGATGAAGATCATGAGGAGTCTCAGGAGTGGGAGGTGCCCGTGATGAAGCACGAGGTAAAGTGCGAGGAGGTGCTGGAGCCGGAGCCAGCGCAGGCGCTGAATATCATAGCAAATCAAGAAGAATCATTTGTTAAGGAGGAGCCGGACATTAATGACAGTGGTAGCTATGCAGAGCACCCAGTGCCCCAGGTGACTGTCGCGCCGGAGCTTCTGCCCCTGTCAGACAGTCAGCCAGCCAGCGCCGGCTTCAAATCGATTCTCGAACAAAGACTCACGCACTATCCACCCACCAACAATGATCAGGAAAATGTGCAAATCAAAACGACTCATTTTGACAAAGAAAAGACTAAGAAACTTTTTGGGTGCGACATGTGCCCCAAGCAGTACACAGAAAAGGGCAGtttaaataaacacaagagGCGCCACGCGGGATACAAACCTTTTGAGTGCGATGTCTGTTCGAAACAGTTCCCAGAAAAGACCAGTTTAGACAAGCATTTGCTTATTCATACGGGGAAGAAACCTTTTGAGTGCGACGTGTGCTCCAGGCAGTTCACAGAAAGGGGCAGCTTGAACAGGCACAAGCGTATTCACACGGGGGAGAAACCTTTTCAGTGTGATGTCTGCTTCAAGCATTTCAGGCATAAAGGCAGTTTAGATACTCATAAGCATGTTCACACAGGTGATAAACCTCACGAGTGCGATATTTGCTCGAAACGTTTCTCGCAGAAAAGGTGTTTGGAAAAGCACAAAAGAATTCACACGGGGATAAAACCTTACCAGTGCGATGTCTGCTCGAAACATTTCACTGACAAGAGTAGTTTGACCTGGCACAATAAGCGTATTCACTCGGAAGTGATGCCGTTCGAGTGCGATATCTGCCCGAAGAAGTTCAGGCAAAAGAGTCATTTGGACACGCATAAGCGCCGCCACACGGGCGAAAAACCTTTCGAGTGTGATATATGTTCGAAGCAATTTGTGCTCAATAGTGATTTAGTCACACACAAACGCATTCATACGGGAGTCAAGCCTTTCCAGTGCAGTGTCTGTTCAAAGCAATTCACAGCAAGAAGCACTTTGAACACCCACGTCCGCATTCACACTGGGGAGAAACCTTTCGAGTGCGATGTCTGCTCAAAGCAGTTCAGGCAAAGGAACAATTTGGACGTGCACAAGCGCATTCACTTAGGGATAAAACCTTATGAGTGCGATCTTTGCTCGAAGCAGTTCACAGAAAAGTACATTTTGACTTGGCATATGAGTACCCATACTGGGGAGAGACCTTTTGAATGCGATATCTGCCCGAAGAGATTTGTGAAAAAAAGCGATATGGTGAGACACAGGCGTATTCATACGGGGGAAAGACCTTTTGAGTGCGATGTATGTTCTAAACAGTTTAGGTTTAAGAACAATTTGGATGAGCACAAACCAAATCAAGAAGAATCATTTGTTAAGGAGGAGCCGGACATTAATGACAGTGGTAGCTATGCAGAGCACCCAGTGCCCCAGGTGACTGTCGCGCCGGAGCTTCTGCCCCTGTCAGACAGTCAGCCAGCCAGCGCCGGCTTCAAATCGATTCTCGAACAAAGACTCACGCACTATCCACCCACCAACAATGATCAGGAAAATGTGCAAATCAAAACGACTCATTTTGACAAAGAAAAGACTAAGAAACTTTTTGGGTGCGACATGTGCCCCAAGCAGTACACAGAAAAGGGCAGtttaaataaacacaagagGCGCCACGCGGGATACAAACCTTTTGAGTGCGATGTCTGTTCGAAACAGTTCCCAGAAAAGACCAGTTTAGACAAGCATTTGCTTATTCATACGGGGAAGAAACCTTTTGAGTGCGACGTGTGCTCCAGGCAGTTCACAGAAAGGGGCAGCTTGAACAGGCACAAGCGTATTCACACGGGGGAGAAACCTTTTCAGTGTGATGTCTGCTTCAAGCATTTCAGGCATAAAGGCAGTTTAGATACTCATAAGCATGTTCACACAGGTGATAAACCTCACGAGTGCGATATTTGCTCGAAACGTTTCTCGCAGAAAAGGTGTTTGGAAAAGCACAAAAGAATTCACACGGGGATAAAACCTTACCAGTGCGATGTCTGCTCGAAACATTTCACTGACAAGAGTAGTTTGACCTGGCACAATAAGCGTATTCACTCGGAAGTGATGCCGTTCGAGTGCGATATCTGCCCGAAGAAGTTCAGGCAAAAGAGTCATTTGGACACGCATAAGCGCCGCCACACGGGCGAAAAACCTTTCGAGTGTGATATATGTTCGAAGCAATTTGTGCTCAATAGTGATTTAGTCACACACAAACGCATTCATACGGGAGTCAAGCCTTTCCAGTGCAGTGTCTGTTCAAAGCAATTCACAGCAAGAAGCACTTTGAACACCCACGTCCGCATTCACACTGGGGAGAAACCTTTCGAGTGCGATGTCTGCTCAAAGCAGTTCAGGCAAAGGAACAATTTGGACGTGCACAAGCGCATTCACTTAGGGATAAAACCTTATGAGTGCGATCTTTGCTCGAAGCAGTTCACAGAAAAGTACATTTTGACTTGGCATATGAGTACCCATACTGGGGAGAGACCTTTTGAATGCGATATCTGCCCGAAGAGATTTGTGAAAAAAAGCGATATGGTGAGACACAGGCGTATTCATACGGGGGAAAGACCTTTTGAGTGCGATGTATGTTCTAAACAGTTTAGGTTTAAGAACAATTTGGATGAGCACAAACaaattgaaaaaaaaacacttaaaaagaAGGAGTCCAACATTTTCGAGCCCCAGGCCTCTGTTGCGCCGAAACCTCTGTCGGGAGCGCTTCCAGTCTGCGAGCCATCCTTCCGCATCTGTTTTAAATCGATTCTTGAACAGAGACTCGCGCAGTACCAACCCATTAAGAATGCTCAGACCACAGATCTGAACAAGAAAACTACCGTTTCTGACGAGCACACGTTGACGAGTAAGGGTGGTGGTGGGGCAATCTTTAAGTGCGATGTTTGCACGAAGCAGTTCTCAGAAAAGAGCAGTTTGAACAAGCACAAGAGTCGCCACACAGGAAATAAACCTTTTGAGTGCGATGTCTGTTCGAAGCAATTTGCAGAAAAAGCCAGTTTAGAGAAACATATGCGTGTTCACACAGGGGAGAAACCTTATAAATGCAATGTCTGCTTGAGGAAGTTCACAGAAAAGAGCAGTTTGAACAGGCACAAGCATatccacacgggggaaaaacCTTTTAAGTGTGATGTGTGCAACAAAAAGTTTAGGCATAAAGGCAGTTTGGATAGTCATAAACATATTCACACGGGAGATAAACCATTTGAGTGCGATATCTGTTCGAAGCGTTTCGCGCAACAAAGGTGTTTGGAGAAACACAAGCGAAATCATACGGGGATAAGACCTTTTGAGTGCGACGTCTGCTCGAAGCGGTTTACAGAAAAGGGAAGTTTGAATTGGCACAAGCGTATTCACTCAGAAGAGAAGCCTCATACGTGCGATGTTTGCTCGAAGCAGTTCAAGCAAAAGTGTCATTTAGAGACACACAAGCTCCGTCACACGGGAGATAAACCTTATGAGTGCGATATCTGCTCCAAGCAATTTGCGCAAAATAGCGACTTAGTCACACACAAGCGTATTCATACGGGAACCAAATCTTTTCAGTGCGGCGTCTGCTCGAAACAGTTTACAGCAAAAAGCACTCTAAACAACCACATCCGTATTCACACCGGGGAGaaacctattttgctcaaatttgtaagcgctgtgcgcgagtag
Protein Sequence
MSVDLNLVKCEVKVERLDEDHEESQEWEVPVMKHEVKCEEVLEPEPAQALNIIANQEESFVKEEPDINDSGSYAEHPVPQVTVAPELLPLSDSQPASAGFKSILEQRLTHYPPTNNDQENVQIKTTHFDKEKTKKLFGCDMCPKQYTEKGSLNKHKRRHAGYKPFECDVCSKQFPEKTSLDKHLLIHTGKKPFECDVCSRQFTERGSLNRHKRIHTGEKPFQCDVCFKHFRHKGSLDTHKHVHTGDKPHECDICSKRFSQKRCLEKHKRIHTGIKPYQCDVCSKHFTDKSSLTWHNKRIHSEVMPFECDICPKKFRQKSHLDTHKRRHTGEKPFECDICSKQFVLNSDLVTHKRIHTGVKPFQCSVCSKQFTARSTLNTHVRIHTGEKPFECDVCSKQFRQRNNLDVHKRIHLGIKPYECDLCSKQFTEKYILTWHMSTHTGERPFECDICPKRFVKKSDMVRHRRIHTGERPFECDVCSKQFRFKNNLDEHKPNQEESFVKEEPDINDSGSYAEHPVPQVTVAPELLPLSDSQPASAGFKSILEQRLTHYPPTNNDQENVQIKTTHFDKEKTKKLFGCDMCPKQYTEKGSLNKHKRRHAGYKPFECDVCSKQFPEKTSLDKHLLIHTGKKPFECDVCSRQFTERGSLNRHKRIHTGEKPFQCDVCFKHFRHKGSLDTHKHVHTGDKPHECDICSKRFSQKRCLEKHKRIHTGIKPYQCDVCSKHFTDKSSLTWHNKRIHSEVMPFECDICPKKFRQKSHLDTHKRRHTGEKPFECDICSKQFVLNSDLVTHKRIHTGVKPFQCSVCSKQFTARSTLNTHVRIHTGEKPFECDVCSKQFRQRNNLDVHKRIHLGIKPYECDLCSKQFTEKYILTWHMSTHTGERPFECDICPKRFVKKSDMVRHRRIHTGERPFECDVCSKQFRFKNNLDEHKQIEKKTLKKKESNIFEPQASVAPKPLSGALPVCEPSFRICFKSILEQRLAQYQPIKNAQTTDLNKKTTVSDEHTLTSKGGGGAIFKCDVCTKQFSEKSSLNKHKSRHTGNKPFECDVCSKQFAEKASLEKHMRVHTGEKPYKCNVCLRKFTEKSSLNRHKHIHTGEKPFKCDVCNKKFRHKGSLDSHKHIHTGDKPFECDICSKRFAQQRCLEKHKRNHTGIRPFECDVCSKRFTEKGSLNWHKRIHSEEKPHTCDVCSKQFKQKCHLETHKLRHTGDKPYECDICSKQFAQNSDLVTHKRIHTGTKSFQCGVCSKQFTAKSTLNNHIRIHTGEKPILLKFVSAVRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-