Basic Information

Insect: Acleris holmiana
Gene Symbol: clz9
Assembly: GCA_949316455.1
Location: OX438788.1:9024345-9027056[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.2e-07 0.00011 23.1 0.1 1 35 8 41 8 47 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.2e-07	0.00011	23.1	0.1	1	35	8	41	8	47	0.89

Sequence Information

Coding Sequence: ATGACaccgaaaaaaaattatacaaaagAACAAATGGCTAAGGCTATCGAAGCAGTCAGAAGGGGGGAGAAAATATCTGTTGCTGCTACAAAATATGCTGTCCCAAGGATCACATTACATAATAAAATCACTGGGAAAAGTCCTATTCATTGTAATCTAGGTCCAGCCACGGTACTCGCATATGAGGAAGAAAGGCTACTCGTAAGATGGATAAAATTTATGGCTGAAAAGCATTTCCCTGTCACGAAAGATCAATTGCTTGACAGTGTTCAAAAAATTATATCTGAAAAGGATCTAGATTCCTGTCCGTTTACAAATAATCGGCCAGGGAAAAAATGGTTCTCAGCCTTTTTGAACAGGCATCCAGATGTCTCAGAGCGCACTGCACAAAACTTAAGCAAAGCGAGAGAAGAAGTCACGGAAGATGATATACTCGGTTGGTTTCATGTTATTAATGGttatcttgaaaaaaaaggCTTGCTTGAAGTAATAAATGACCCTCAAAGAATTTTTAATGGTGATGAGAGCGCATTCTACCTACAACCTAAAGCTGGACGAGTCATAGTGCGCAAAGGTGAGAAAAATGTCTATGCAGCATCAGGAGACgagaaagaaaatttaactgtGTTGATGACTGGTAACGCTGCTGGAATTTTAGCTCCACCTATGATAGTATACGCTTATGAGCGTTTACCTGCCGTAATTGCAAATAGCGTACCAAAAGATTGGTGCATAGGCCGGTCGGATTCAGGCTGGATGTGTGCAAAAACATTCTATGAATACATTACTAATGTATTTAATCCatggatagaaaaaaaaatatacctaagccCGTTATATTATTCTTGGACGGCCATTAGGTCACACATGACCCTGCATCTATCAAATTTTTGTAAGGATAATGGGATTGAAGTAATCTCTCTATATCCTAACTCGACACATTTACTCCAACCAATGGATGTTGCGGTATTTAGACCTTTGAAGCTATCGTGGAAGAATCAAGTGAAGAGTTGGAAAAGAGAAAATCCAAAACAAGTCATAAAGAGAGAGCACTTTGCTCCGAACTTTGAGGCAGCTTTGCGCAACCTTGAGACGGATACAATAAAAAACGGATTTCGAAAAAGTGGCCTTTTCCCCTTCGGTCCAGAATACGTCGAcatgaataaaataagtttacacAACCGTGCCACTGTTTCCATATCAGCATTGGGAAAAAAAATTGATTCGACAAAACAATTTATGAATACTTTGGAATCAGAAATACGAAACCTGTTTACAGATGAAAAACTGAACTTATTCACCACGATGTATTATACACCCAGAGCTAACGTCGAGGACTTGCTTCCTAATGAGGATCTGTCGTTATATACCATTTGGGCTAAATCTAAACACTATTTGGCAGAACATTCATCTCAGACAGCAACTATCGCGGAACAATCGATACAAGTCTCAGATTCTCCCGAACCTGAACATGCAAGAGAGTCCGAGATTTTGGCACCAAAAACTCCTGAGGCATATGTGTCCGAGAATCCAGATTCTAGTTTCCCTGAACACACAGTGGACGTCGCTGATCGCATCAGCAATAAAACACCAGAAACGTTGACCACAGATATGCAGGAAAGTGAATATCAGCCGAGTACGTCACAAGTTTGTACAGACTTGAATGCCACCGATGGCGATGGTGGCAATCCAGATCAAAGTCCTCTTCCTTCTGTTACAGATGTAACTAAAACGGCATCCAAAGATATTCCCTGCACGGCAATGAATTCTACACCTAAGAAAGTTCAGACTTTTAAATCAAGTGACACAATAGCAAAATCGTTGCATTCCAACGCACAACATTTAATAGAGGGAACTATTGAATctattacagaattatcgaatATGGTGTCAAATGATATTCTATGCTCAGCAATGTGTACTCCTGATAAAGTTCAGACTTCTGAATCAAATGACACTATAGCCAAGCCCTTGCCTCCAAAGCCCCAAAATCTAATGGAAGAAAATATTCCATCCCCGTTTAAACGTGCTTTATTTTGGCCAGAACCAGATACGAAAAAAAGGCGTACTAAAGAACGGATTCCTTCAGCAATTACTGGTGAAACATGGAGAGCATATATGACGAAGAaggaaaacgaaaaaaaacagaaggaagaagagaaaaataaaagaatgaAAGAGAGACAAGAAAAACAACTAATGAAAAAGAAGATGGCTGAAGAAAAgagtgttttaaataaaaaaaacatcgcaAAAACCGTAACTAAGAAAAGGAAGATAATTGAATCATCTATTTCATCAGAAGAAGAAAATGATATACATATACCATATCAAGAAAGTGACCAAGATTTAGAGTTGTCTGAAGAGGACCAGATAAACCAACCAAAACGTAGAACTGAATCAACAGATTCAGATGAAAATATTCCCCTAAAAAACATATCCCTGCAGTTATTAAGGAAAAATACatatgttataattaaatacgAAGGAGAATACTTTCCCGggttgattaaaaatattgataataatatatacGAAATAAGTACAATGGTAATTTCGAAAGGAAATACATTTAGGTGGCCTGATACTCCAGATCAAATTTGGTATAATAAGGAagcaataattgaaaaaattcAGCAGCCTCAGGTTATTAACAAGAGGGGATTTCTTAAAGTACCTGAAATGCAAAAATATTTGCCATTTATCTGTTAA
Protein Sequence: MTPKKNYTKEQMAKAIEAVRRGEKISVAATKYAVPRITLHNKITGKSPIHCNLGPATVLAYEEERLLVRWIKFMAEKHFPVTKDQLLDSVQKIISEKDLDSCPFTNNRPGKKWFSAFLNRHPDVSERTAQNLSKAREEVTEDDILGWFHVINGYLEKKGLLEVINDPQRIFNGDESAFYLQPKAGRVIVRKGEKNVYAASGDEKENLTVLMTGNAAGILAPPMIVYAYERLPAVIANSVPKDWCIGRSDSGWMCAKTFYEYITNVFNPWIEKKIYLSPLYYSWTAIRSHMTLHLSNFCKDNGIEVISLYPNSTHLLQPMDVAVFRPLKLSWKNQVKSWKRENPKQVIKREHFAPNFEAALRNLETDTIKNGFRKSGLFPFGPEYVDMNKISLHNRATVSISALGKKIDSTKQFMNTLESEIRNLFTDEKLNLFTTMYYTPRANVEDLLPNEDLSLYTIWAKSKHYLAEHSSQTATIAEQSIQVSDSPEPEHARESEILAPKTPEAYVSENPDSSFPEHTVDVADRISNKTPETLTTDMQESEYQPSTSQVCTDLNATDGDGGNPDQSPLPSVTDVTKTASKDIPCTAMNSTPKKVQTFKSSDTIAKSLHSNAQHLIEGTIESITELSNMVSNDILCSAMCTPDKVQTSESNDTIAKPLPPKPQNLMEENIPSPFKRALFWPEPDTKKRRTKERIPSAITGETWRAYMTKKENEKKQKEEEKNKRMKERQEKQLMKKKMAEEKSVLNKKNIAKTVTKKRKIIESSISSEEENDIHIPYQESDQDLELSEEDQINQPKRRTESTDSDENIPLKNISLQLLRKNTYVIIKYEGEYFPGLIKNIDNNIYEISTMVISKGNTFRWPDTPDQIWYNKEAIIEKIQQPQVINKRGFLKVPEMQKYLPFIC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -