Ahol024501.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438774.1:13545067-13546062[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9e-08 3.1e-05 24.9 0.0 2 42 11 51 10 54 0.88 2 2 3.7 1.3e+03 0.5 0.0 22 35 165 179 164 184 0.83
Sequence Information
- Coding Sequence
- ATGACTAAGCGCAAATATAACTACTGGGCTCCAGCCAATATGAAAAAAGCGATTGAAGAATATAAGAATGGAATAAGTACATTCAACGCGTTTTGTAAAAAATACGAAGTACCTAAATCAACGTTTCGACGTCACCTAAAAGGTTTGAATAAGCATCAAAAAATTGGACGTCCAAAATGTTTGTCTCAAGAAATGGAAGAAGAGCTGGTCAGACACATTTTGGATATAGAGTCTAGATTTTTTGGCATTACTATACGTGACTTACGTCGTTTAGCGTACCAATTggcagaaaaatataattttcccaacacatttaataaagaaaaagagTTAGCAGGTTGGAAATGGTACTACacgtttttaaaaaatcattctGGAATATCATTACGAGCTCCAGAGCCGTCTATGGCCCGTAGCAAGGGATTTAACAAAAAAGTAGTTATGGAGTTTTTCGACAAATATGAGACCCTGCTTGATACTGGAAAATTTACTGCCCAGCAAATTTATAATGTAGATGAGACCAGCTTGAGCACAGTGCATAAACCTTCAAAAGTTCTAGCGCTTAAAGGCAAACGTCAGGTTGACGCAGTTACAAGTGGAGAACGGGGGCTGAACACAACATcgtcgatttGCTGCATGAACGCTGCTGGTGAATTCATCCTACCAATGCTAATATTTAAACGCAAAAGGATGACGGACGATATCAAAAGAGGAGGACCGCCCAATACCGTGTACAGTTGCTCGGACAGTGGATGGATAACTTCCGAATTATTTTTGGAATGGTTGCAGCATTTTGCCAAGAGCACAAGGTTAGAAAAGGCAAGAAAAATCAGATTGTACTAA
- Protein Sequence
- MTKRKYNYWAPANMKKAIEEYKNGISTFNAFCKKYEVPKSTFRRHLKGLNKHQKIGRPKCLSQEMEEELVRHILDIESRFFGITIRDLRRLAYQLAEKYNFPNTFNKEKELAGWKWYYTFLKNHSGISLRAPEPSMARSKGFNKKVVMEFFDKYETLLDTGKFTAQQIYNVDETSLSTVHKPSKVLALKGKRQVDAVTSGERGLNTTSSICCMNAAGEFILPMLIFKRKRMTDDIKRGGPPNTVYSCSDSGWITSELFLEWLQHFAKSTRLEKARKIRLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -