Ahol021452.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438772.1:15291-35857[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 3.9e-08 34.1 0.0 4 39 351 387 348 391 0.90 2 4 2.6e-11 8.9e-09 36.2 0.3 2 39 403 440 402 443 0.93 3 4 6.4e-14 2.2e-11 44.5 0.0 2 45 458 502 457 502 0.96 4 4 1.6e-17 5.3e-15 56.1 0.0 1 43 509 552 509 554 0.95
Sequence Information
- Coding Sequence
- ATGCGATTTACAAGTTTTCCgacgaagaaaataaaatacaaagaggCGGAGGAACCGGCATTGACTCTGGAAGCTACAGAAAAACACGCAGAGGTGAACGGCACTACGGGAGCAGCGTCAAGGGGGACAGAGTCCAGAATTGGAGAGGCAAGCGAGGGCTTGCACTACGCGCGCGGGAGCGGGGCGCCGCCGCGAGCAGGGCGCGGGCCTGGGGCAGCGGccgggcgcgggggcgcgccggtggcgctgcggcacggcgcaccaggcgcatgcggccgacaggaaatGCACGGTCGCGGGCTGTTGCTGGTCAAGTGTGAGCCGGCCTCGGAAGAAGACAGCAACTCGCAGTTCACGCACAGCTTCTTTGCAAATCAGATACCGTCACTGGAGCTCCGTCCGGTGAAACTCGAGCCGGGGATCGACGACAATGCGTCGGTGCACATCCTGCGCCACCTGCAGACCTGGTCTTTCACCAACGCCATAACACAAAGGCTAAAAGTATGCCAACAGGGAATGGAGAGGAGCATGCTGGGGGTCCGACTAAAGGACAAGTGGAAGCTCACCGTCATACGAAACAAAACAAAGGTCGTTGACATCGTTCACAAGGCAAGAACCCTTAAATGGCGTTGGGCTGGCCACATGATGCGGTCTGAGAAAGAAAAGTGGTCAAAAATAATCACTGTGTGGTATCCTCGAGACAGTAAAAGAAGGAGAGGCGGGCAGGGCGGGGAAGGTTTGGAGGAGCTGGCGCCGCCGCCGACGGGCCCCACGGCGACGCCGGTGTGCATCAAGCAGGAGCCCGCCGAGCCCGCCGTGTCCCTCGAGACTCTCGAGCCCGCCAACCATGACACCCTGGGTTCTACACTGATCGATCGGCACAAGACGCTACCAGGCGCCAACGACGCTGACTCCTTGGACTTCATGCCGCTTCTTGCTGTCAAAGACGAACCCCTGTCGGAAGGAGAGCAACAGCACCTGAGTGGATCAGACACCAGTGACTCGACGCCGCCGGAACTCTCGCGCAGTCCCAAGAGCTGGACGCAACGCGACATGGCACTTGCGCTCGACGCACTGCGAAACCACAACATGAGCCTCACTAAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCAAAGAAGGAGGGCGCCTCCAAGTCCTGGGGCGAGGCCGACCTGCGCGCCGCGCTCTCCGCTCTGCGCGAGGGCGCCATCTCCGCCAACAAGGCCAGTAAAGCCTACGGCATCCCCAGCAGCACACTGTACAAGATCGCTCGGCGCGAGGGCATCCGGCTCGCGGCGCCGTTCAACGCCGCGCCCACCACCTGGCGCCGCGCAGACCTGGAGCGAGCACTTGCTTCTATCCGCTGCGGGGCTTGTTCCGTGCAACGAGCTGCTTCACAGTTTGGCATTCCTACAGGCACGTTATATGGTCGATGTAAGCGAGAGGGTATTGAGCTGTCCCGATCTAACCCCACTCCTTGGTCCGAAGACGCCATGGGCGAAGCACTGGAAGCAGTTAGAGTGGGCCAGATGTCGATAAACCAAGCTGCAATTCATTACAACCTACCTTACTCGTCACTCTATGGACGGTTCAAGAGATGCAAATATCAAAGTCCTCAAGGAATGCCTCAACAAACCATGTCCGAAAATATGGAAATGGAACCTCAATCACAATCACAAGAGTTATACTACCATAACCAAAACGTGCCAGTGGGTCATACTATGCACCATCCTGAACAAGACGTTCAGAATCCGTATCTTCACCAGACTTATGCCATAAGTAATCCGGGGTTCGATGGGATGCATGGCAATATGTTTGCGGAGCAGAATTATGGGATGTATTACCAAGGGTGCAGCAGTATTGCTACCAGTTGA
- Protein Sequence
- MRFTSFPTKKIKYKEAEEPALTLEATEKHAEVNGTTGAASRGTESRIGEASEGLHYARGSGAPPRAGRGPGAAAGRGGAPVALRHGAPGACGRQEMHGRGLLLVKCEPASEEDSNSQFTHSFFANQIPSLELRPVKLEPGIDDNASVHILRHLQTWSFTNAITQRLKVCQQGMERSMLGVRLKDKWKLTVIRNKTKVVDIVHKARTLKWRWAGHMMRSEKEKWSKIITVWYPRDSKRRRGGQGGEGLEELAPPPTGPTATPVCIKQEPAEPAVSLETLEPANHDTLGSTLIDRHKTLPGANDADSLDFMPLLAVKDEPLSEGEQQHLSGSDTSDSTPPELSRSPKSWTQRDMALALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWGEADLRAALSALREGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWRRADLERALASIRCGACSVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQGMPQQTMSENMEMEPQSQSQELYYHNQNVPVGHTMHHPEQDVQNPYLHQTYAISNPGFDGMHGNMFAEQNYGMYYQGCSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -