Basic Information

Insect: Achroia grisella
Gene Symbol: -
Assembly: GCA_030625045.1
Location: JAULSB010000462.1:191792-201554[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.9 5.8e+02 1.9 0.2 1 21 218 238 218 241 0.87

2 10 0.44 32 5.9 3.5 1 21 273 293 273 296 0.95

3 10 0.0047 0.35 12.1 4.0 1 23 339 361 339 362 0.94

4 10 6.9e-06 0.00051 21.0 2.2 1 23 366 388 366 388 0.97

5 10 1.8 1.3e+02 4.0 0.4 2 23 396 416 396 416 0.91

6 10 0.0003 0.022 15.8 3.1 1 21 422 442 422 447 0.94

7 10 2.3e-05 0.0017 19.3 0.8 1 23 455 478 455 478 0.96

8 10 0.00065 0.048 14.8 3.9 1 23 484 507 484 508 0.97

9 10 9.8e-05 0.0072 17.4 0.4 3 23 519 539 518 539 0.94

10 10 4.8e-05 0.0036 18.3 2.0 2 23 546 568 545 568 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.9	5.8e+02	1.9	0.2	1	21	218	238	218	241	0.87
2	10	0.44	32	5.9	3.5	1	21	273	293	273	296	0.95
3	10	0.0047	0.35	12.1	4.0	1	23	339	361	339	362	0.94
4	10	6.9e-06	0.00051	21.0	2.2	1	23	366	388	366	388	0.97
5	10	1.8	1.3e+02	4.0	0.4	2	23	396	416	396	416	0.91
6	10	0.0003	0.022	15.8	3.1	1	21	422	442	422	447	0.94
7	10	2.3e-05	0.0017	19.3	0.8	1	23	455	478	455	478	0.96
8	10	0.00065	0.048	14.8	3.9	1	23	484	507	484	508	0.97
9	10	9.8e-05	0.0072	17.4	0.4	3	23	519	539	518	539	0.94
10	10	4.8e-05	0.0036	18.3	2.0	2	23	546	568	545	568	0.96

Sequence Information

Coding Sequence: atggatgattattgtataaaaaaattgtgttgtaCATGTCTATGTAAAGATCGTAAACTATATCAGCTGTGTCGAGTGTCCGACGGTGTTAATAACTTGTATTTGTTGTTATCCTTTGATTCGGAAGCTTACAGAGAAGGGTTCTACAAGGACACAGCTAATTTGTTTGTCTGTTGGGAATGCAAAGCCATTATGTGTAGGATCACTAAGTTTCGAGAGCAAGCATGCATTGCACAGAAAGAACTTTCCGGAATAACAGATGGTCGCCAAAATttaaaACTGGATGGCCTATCAAATCTAACTTTCACATTTAAACATGGCTATGATAAAATTATCACTGAGACCAAATTAATAACAGATAATTTTATAGACTGTGGTCCTACCACAGATATTAAAACAGAAAGTGAGGAAGACATTCCATTATCTgagttacataataattatatatctgaTACCCTAAGTGATATTGTAACTGGCCCCATAAAGTCAAAAGTTTATCAGAAAcggaagaaaaaaataaaaagtaccaAAAATAATGGAATCTACTGTGATAGTAATAAGAAGTATTTTACAATGAATGAGATGAATGAAGTTAATATGATGGAGAGTAGAGAGAAAAGAAAGATGGCGGCAATGTTTGCAGATGCTGCATTTAAATGTGATAGCTGTATTGAAGGGTTTAAGAGTGATATTGATTTGCTGACACACAATTTAGATTTACATACTGAGAAACCCAACCACATACAATGTAACATATGTCTATCTTACATAGATGAGACCTCAATCACAGATCATAAGAAAGCccattattatagttatacttGTCAATTTTGTGATTATATGACATACAGTCAATTCGAGATATCGAGGCATCTGAGGTGTGGGCATGCTATGAAGAATGTTGTGGTCTCTGGGAAGAGGAAGAAGGGTCAAAGAAAAACGTCTGTAGTGCTACGGCCAGGGACGAAGCCCCGTAGGAACCAAGCGATGATGGACAAACGGACTCCGTACGGTTATCTATGTAcagaatgtaataaatatttcgaTAATAAGAACCAGCGATGGAAACACGTGCAGCGACACCACCGCGAGGGTTATAAATGCTCAACGTGTGGGAAGAGATTCGCCTTCAAGAATAATCTGAGCAGACACGAACAGCTACACCAAGGCCCGCCGCCCCGAGAGGAATGCACCGTCTGCCACAAGATGATCAGGGTGGACCTGGTGAAGATCCACGCGAGGATCCACTCCGACCGGCAGCAGTTCACCTGCGCAGAGTGCGACAAGTGCTTCGTTAGTCGCGCCTCGTACGAGCATCATTTGAAGTATACTCAAGCACACGCCGCTGTTGATATCCTCAAGTACAAATGTTCAATGTGCGACAAGGGGTACAGATCTCGCGGCGAGCTGCGGGACCACGTCAACTACCAACACATGGGGAAGACGCAGCACAAGTGTCCGATCTGCGGAAAGGCGCTAGCGACGCGTCGTTGCATCACAAGACACGTGCGCCGTGCTCACCACGGTCTCAAAGAGAGTGCGCGAGATAAGATCTGCCAGCAGTGCGGGAAAGCGTTCCGGGACAAAAAAGGTCTGAGGGAGCACGAGTTCATACATACAGGGGAGAGGCCGCTCTCCTGCGAGATATGCGGATGTACGTTCAGACAAAGCGCCTCTTTATATACACACAGaaaacgAGTACACAAAATATATCCACAAAAGAAAAGTGTGGAATTGCTAGAGAGCACACCCGCAAGCGGCAGTTGA
Protein Sequence: MDDYCIKKLCCTCLCKDRKLYQLCRVSDGVNNLYLLLSFDSEAYREGFYKDTANLFVCWECKAIMCRITKFREQACIAQKELSGITDGRQNLKLDGLSNLTFTFKHGYDKIITETKLITDNFIDCGPTTDIKTESEEDIPLSELHNNYISDTLSDIVTGPIKSKVYQKRKKKIKSTKNNGIYCDSNKKYFTMNEMNEVNMMESREKRKMAAMFADAAFKCDSCIEGFKSDIDLLTHNLDLHTEKPNHIQCNICLSYIDETSITDHKKAHYYSYTCQFCDYMTYSQFEISRHLRCGHAMKNVVVSGKRKKGQRKTSVVLRPGTKPRRNQAMMDKRTPYGYLCTECNKYFDNKNQRWKHVQRHHREGYKCSTCGKRFAFKNNLSRHEQLHQGPPPREECTVCHKMIRVDLVKIHARIHSDRQQFTCAECDKCFVSRASYEHHLKYTQAHAAVDILKYKCSMCDKGYRSRGELRDHVNYQHMGKTQHKCPICGKALATRRCITRHVRRAHHGLKESARDKICQQCGKAFRDKKGLREHEFIHTGERPLSCEICGCTFRQSASLYTHRKRVHKIYPQKKSVELLESTPASGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -