Agri007102.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000127.1:212766-228079[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.34 25 6.2 0.2 1 23 290 314 290 314 0.92 2 15 3 2.2e+02 3.3 0.5 3 12 354 363 352 368 0.85 3 15 8.9 6.5e+02 1.8 0.6 1 19 374 392 374 394 0.95 4 15 0.0071 0.52 11.5 1.2 1 23 414 437 414 437 0.95 5 15 0.19 14 7.0 0.6 2 21 475 494 475 495 0.91 6 15 1 73 4.8 1.3 1 22 530 552 530 554 0.89 7 15 0.13 9.3 7.6 0.6 2 23 919 941 918 941 0.94 8 15 2.4e-05 0.0017 19.3 0.2 2 23 947 968 946 968 0.97 9 15 0.76 56 5.1 5.7 3 23 1067 1087 1066 1087 0.96 10 15 0.0069 0.51 11.6 1.6 2 23 1103 1124 1102 1124 0.97 11 15 5.1e-06 0.00038 21.4 1.6 1 23 1130 1152 1130 1152 0.96 12 15 3.3e-05 0.0025 18.8 1.0 1 23 1157 1180 1157 1180 0.96 13 15 0.00022 0.016 16.3 1.5 1 23 1186 1209 1186 1209 0.96 14 15 0.026 1.9 9.8 2.0 1 20 1216 1235 1216 1235 0.96 15 15 0.0012 0.09 13.9 0.1 3 23 1248 1269 1247 1269 0.93
Sequence Information
- Coding Sequence
- ATGACGGAGAATTGCAATAAGAGGTCTAGAAAGTCCAAATTAGTGCCGCGTGTGTGTCCAGACGTCGATGATAATATTCCGCAAGTGGAGTATGTACCGAAAAAGCTGCCGAGGCTTCTACCAAAGTTAAACTGTCCAACACCTTCTGGAAATGCACTGAAAATCATTAGTAAGCCACCCATTagcttcaatataaatatagaagtaGAAGAATATGATGAAAATGCAATTGTTGTTGATGAGTCTAATGATGATAGTGATAAGAATGAAGATGAACTACTCGAAAATGAATTAAAGCTGGAAAATGAAATAAACGAAACACTAACTAAAACACTCAAAGACAATGGTTCCCTTGAGGTATTACTTGATAAATCTGTACAtagtatattaaagaaaaattgtGGTAATGATACAATACCTGATTATATTGATCAACATGATTCTGACACTGGTATGTACAAAGTTTTCTCTTTATCGACGAAAGATCTGGAGCGTATGTCTACCAAGGAACATGAGCAAACATCTAAAGATAATGTTGATGAGAATGATGCAACTGAAAATATAGTAATCACTAATACTACGGCTAATAATGACCAAGCATTAACTTCAGATTCACAAAAAACTGACTATTTGTCTTCAGAACCACTGTCGATAAATCATAATGAATTGTTCAGAGATGCTATTCTTATTAGAAATACGGCAGCAAATCCAGCAGATAGATTATTAGCTGTAGAATTATTGAATTCGTGGGGGCAGCGGAAGAATGGAGTAATGGAAGAGTCTAATAATGAAATGATTCTGCAAGCAGTGTTAGACAAATGGAGACATTGGCAAAGCCTCTCTTGGTGCAGAGAAACTCCCATGACCTACAAATGCTATTTATGCAAAGTAGGATTTTGGCGTTTGTCTCTATTCCGTGACCATATCGCTACACCTGGCCATGAGAATATAAAGATGGCGCTGGAGACTGTATACCATGAATGCCACATAAGTGCCTACGTGGCAGAAGATAATTTTGGCACGAATTTTACCATGCTGCATTTCCCCATTGAATCCAATTGCTTAAAGTGCAATAAAAGTTTTGATTCCCATCCAACAGTGAAAGAACCATATGATGATTATAAATGCAGGTTATGCCTAATACCTTACTTCACGTGCAGAGCCCTGAGACTCCACGAGGGAGTGTGTGGCTTTTTGACTAAGAAGCGCTGTACGAAGGACTCCATTCCTATTGATATGCACAAGTGTTCTATATGCCCCATGTTCTTTTCCAATGAGAAGCAAGTGTTGGAGCACTTATCGATATTTCATAGAGTATGGTCAGACATCCCAAATAATTCCAATTTTAAGTCTTGCAAATTGTgcaatcaaaattatataattttccttaTGCATGACTGTCCAAATAAACATGGATCCAACGTGTGTACGTACTGCCAGACTTGTTTTCCTTCAAGATTGATGGTACAACTCCATTTGAATATGTCTAAGAGCAACTACAAATGTAGGATCTGTAACGTAAGGTTGGACAGACAGTGCATGGAACGTTTGCACTTGTTAGCACACAGTGAACAGTTCATGAAGGTGTATCGATGTAATTTGTGTGTTAACAAAATATTCTACCACTTCGACACTCTTAAATCACACATAGGCGCGGATCACCtgcgattttttaataaaaagggcTACTATAGTATCgtGTTAATAATGAAAAAGACCATGCCAGAATCCAAAAAAGTTATGAGTGCATCAGACGAACAGAGGCTGGCAATCGACAATTTAATGAAAGAAATGGACGAATCAAACGACCAGAATGATAAGACTCCAGAAAAACCAGCAATACGAGCAGCAGACATAATTACGATTAATTTTGATATGCATATGGGTAATCAGGGCTGTAAGATATCATCATTAAATTTACCTAATtctaaaaaattacaatcacaTAGTAAAACTGCAACcttaaatgatgatgatggtaacaGTATACGTACAAATAATGATCATTCAAATGATGATAAtgcaaatgataataatttaattgataataattcaaATCCTGATAATTCAAATGATGCTAATTCATATGATAATCATCCAAATAATGACAATTCAAGTGATGCCAATTCTAATGATAGTCTACCAAATAATGCTAATTCAAATgataaacaatcaaataacgACAATTCAAATGATgctaattcaaataataatcaaCCAATTAACGACAATTCAAATGATAATCAACCAAATAACGACAATTCAAATGATAATGAACCAAATAACGACAATTCAAATGATAATCAACCGAATGACGACAATTCAAATGATAATCAACCGGATAACGACAAATCAAATGATAATCAACCAAATAATAACATTGATGATGAAGAAATCCACAACCAACATATCGAAATGGTGAAGATCAAAGTAGAAATTAAAGAGGAATATGACGTTGAAGAACCCGATTATTACctatcaaatatatttcaagTGTCCCGAGAATTGAGAAACAAGCCAGAAATTAAGGTTGAAATTAAAGAAGAACCAGAACCAGAAGAATATTATCAGGatgatataatagttttaaacagTAATGACGCTGAAGAAGAAAACAACGCATCAGATAACGTACAGCCAGAAACAAGATTGGAAGTGGGTGAACAGGAAACAGTTAAAACCATCAGGCGTAAAATCGAGTTGGACCCAGATAATCAGggatatgttaaaaaaaatactccatTTGACAGTTTAGTTTGCACTAAATGTTTTAAAAGCTATATGACATTAAAAGGTTATGTGATTCATCTCTCTAAGGATCATAATGTTAGAGAAAAAGAGTGTCCGTTATGTGGACGGgtttattcaaatatgtatgcatttatttcACACATAAGAACTCATATAAGGAGATCGTTCTCAATTAAAGCAAGTATTGATAATCCAAGTACATCAAAGGTCGTATCACAGTGCAAGAAGTGTAAAGAAATAGTTATGGTCGATGAACAGTTTGCTCACTGGGAGTCACATTTCGAAATACCTGATGAGTGGGCAGCGAGCAGTACCTATGAGGAACCGTCGTCGCCAACTGAGGATAATGGTATGGAAGGCTTGTTAGAACCAGAGGCTCTCAAATCCCTTGTAAACGGCTTACAAAAGGGCATGTCGAGCATGTCTGCATCGAAGAGAGTAAAGGCATGTCCACACTGCAATCGACTCTTCAACCGCTACCACGAGTGTAAGAGGCACATCATTGAACACCTCCTGATGGACGCATACGCCAAAATTGCGCCTGACAAAGGACTCAAGTGTCAGATATGCTCGGAGCTGTTCCAGAAGCGAGATTCgtACAAGCAACACATGCGTGATCACGCATCTTTGCCTGTGTATTTGTGTGAATTATGCAACAAGGCGTTCAGTGACTCGAGCAATTTTACTAAACACAAGAAGGTCCACAATCTGTCCATCTACCAGTGTCATATTTGCGATAAGAAGTTCCAAATGAAGGCGTCCCTAGTAAAACATATAGGCATGGTACACACAAATGCAGATCCATTTATTTGCGCAGATTGTTCCCAAAACTTCTACACCATGTCCAGTCTAAAAAAACACATCCGTCAAAAACACGATAAAAACAGCCTCAAGTTCAAATGCATGACCTGTAACAAGAAATTCAAGTCGCTGAAAAACAAATGGGATCATATGTGGGACAAACATAAGCAAAGATCACAAGCGGCCGACTGCCCGATCTGTGATGCTGCATTCCGGAAATACTCCGACGTGAAGAGGCATATTACAGAAACCCATAGACATCACCCTGTATATCTTAAATCATTGAATACGCTAACGAGAAATCCGGTTCTGTCcatagagaaaataaaatacatgaagGAAAATAAAGAAACCCTGTTTCCTAAGTAG
- Protein Sequence
- MTENCNKRSRKSKLVPRVCPDVDDNIPQVEYVPKKLPRLLPKLNCPTPSGNALKIISKPPISFNINIEVEEYDENAIVVDESNDDSDKNEDELLENELKLENEINETLTKTLKDNGSLEVLLDKSVHSILKKNCGNDTIPDYIDQHDSDTGMYKVFSLSTKDLERMSTKEHEQTSKDNVDENDATENIVITNTTANNDQALTSDSQKTDYLSSEPLSINHNELFRDAILIRNTAANPADRLLAVELLNSWGQRKNGVMEESNNEMILQAVLDKWRHWQSLSWCRETPMTYKCYLCKVGFWRLSLFRDHIATPGHENIKMALETVYHECHISAYVAEDNFGTNFTMLHFPIESNCLKCNKSFDSHPTVKEPYDDYKCRLCLIPYFTCRALRLHEGVCGFLTKKRCTKDSIPIDMHKCSICPMFFSNEKQVLEHLSIFHRVWSDIPNNSNFKSCKLCNQNYIIFLMHDCPNKHGSNVCTYCQTCFPSRLMVQLHLNMSKSNYKCRICNVRLDRQCMERLHLLAHSEQFMKVYRCNLCVNKIFYHFDTLKSHIGADHLRFFNKKGYYSIVLIMKKTMPESKKVMSASDEQRLAIDNLMKEMDESNDQNDKTPEKPAIRAADIITINFDMHMGNQGCKISSLNLPNSKKLQSHSKTATLNDDDGNSIRTNNDHSNDDNANDNNLIDNNSNPDNSNDANSYDNHPNNDNSSDANSNDSLPNNANSNDKQSNNDNSNDANSNNNQPINDNSNDNQPNNDNSNDNEPNNDNSNDNQPNDDNSNDNQPDNDKSNDNQPNNNIDDEEIHNQHIEMVKIKVEIKEEYDVEEPDYYLSNIFQVSRELRNKPEIKVEIKEEPEPEEYYQDDIIVLNSNDAEEENNASDNVQPETRLEVGEQETVKTIRRKIELDPDNQGYVKKNTPFDSLVCTKCFKSYMTLKGYVIHLSKDHNVREKECPLCGRVYSNMYAFISHIRTHIRRSFSIKASIDNPSTSKVVSQCKKCKEIVMVDEQFAHWESHFEIPDEWAASSTYEEPSSPTEDNGMEGLLEPEALKSLVNGLQKGMSSMSASKRVKACPHCNRLFNRYHECKRHIIEHLLMDAYAKIAPDKGLKCQICSELFQKRDSYKQHMRDHASLPVYLCELCNKAFSDSSNFTKHKKVHNLSIYQCHICDKKFQMKASLVKHIGMVHTNADPFICADCSQNFYTMSSLKKHIRQKHDKNSLKFKCMTCNKKFKSLKNKWDHMWDKHKQRSQAADCPICDAAFRKYSDVKRHITETHRHHPVYLKSLNTLTRNPVLSIEKIKYMKENKETLFPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -