Agri023961.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000471.1:221292-234804[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.015 1.1 10.5 2.3 1 23 348 371 348 371 0.95 2 14 0.00033 0.025 15.7 2.4 1 23 378 401 378 401 0.92 3 14 6.9 5.1e+02 2.1 1.9 1 23 405 427 405 427 0.92 4 14 0.13 9.4 7.6 3.2 5 23 435 454 433 454 0.94 5 14 0.022 1.6 10.0 0.1 2 23 460 482 459 482 0.94 6 14 0.84 62 5.0 2.8 1 20 489 508 489 510 0.94 7 14 0.032 2.4 9.5 0.2 1 23 515 538 515 538 0.91 8 14 2.3 1.7e+02 3.6 2.5 2 20 549 567 548 568 0.93 9 14 9e-05 0.0066 17.5 0.1 2 23 576 597 575 597 0.96 10 14 0.00015 0.011 16.8 3.6 1 23 602 624 602 624 0.97 11 14 2.5 1.9e+02 3.5 1.0 3 23 657 676 655 676 0.90 12 14 0.0094 0.69 11.1 0.5 1 23 682 704 682 704 0.97 13 14 6.3e-05 0.0046 18.0 0.7 1 23 710 733 710 733 0.94 14 14 0.001 0.077 14.1 6.1 1 23 739 762 739 762 0.98
Sequence Information
- Coding Sequence
- ATGGATGATAAAGAAACATCCAGTGATTTGCTTGCATGCCGGGCGTGTTTAGCTACCGATGTCCGACTTTACGATATCTTTAAACATGATTTGAGTGAACATTTTCGAAAATTAACTAGATATCAGATAAAGCAACGCGATGGATATCCTCAGTATCTATGCACCAAATGTGCAGTCCAGCTTCGGAAGGTCGCAGCATTTGTGGACATGTGCAAGAGAGGCCGGGACATCCTGCAAGGCGTCGTAATATCCAACATACCAATAACAACAGACTTCATTCGCAATATGGATCTCGAAGGTCATTTCTTTATGAATTTAGtagaaaaaacattatacaactTCAGTAAGGGATTACATCCGAATATAAATGATGATAACttagcaaatataataataaaagataatgtGGCAATGGTAGAAGATACGGCAGATTTGAATGTTATTAACGCCGATGAAACTGCAAATGCATCTGATTCGAACGACGAAATTTGCGAGGAACctgtaattgtaaatttaaatgaaaatttcgaCGAAGTAAGCAATTCGGATGATGAAAACGATGatgaaattatgtatttaaacaatgatgatgatgattctaaTAATGAATATGATGAAGCATCAATTACCGAAGATTCAAAAGATATGGTTGCCACAGAGAACGGTTTCAGCAATGATGACGCGGAATATTTAACTGTTATAGTAACTGATGAACAGTTAGGTCCAGAATTGGATGATATGAATCTAAACGATAAGAATATAAAACAGATACTTGAAGATTTCGTtccgtataataatattaataacagtgATGCAGCAGCCGTATCTGATTTTATAAGTGATAACGACGACATTTCAAATGAAACATCAGAATTACCATATCTAGTCGCGAGAAAGAAACgtaaaagaaaatatgaaaagaaaaacatatttattaacaacaaaGAATTCGCTGAACGTAATAACTTTAAACTAACAATATTTAATCGTAAACAACAAATGGATGAAATTAGAGCTCTAATAGAATCACCTAGCACGAAATTCCGTTGCGACCAATGCGGAGTCGGGTTCAATTACAAAACGAAATTCTTGAACCATTTCAAATGGAAGCACGACCCCTCGCTCGGGAATTTCGTCTGCAACATCTGCAACACGCGCTTCAGCCAGAAAAGATATCTGTACAATCACAAACTATTCGTTCATTTGTTCAAATACGATTGCAAATTGTGCAAATTTACCACAAGAGCGCGTCACACTGCGGAGAATCACGTGGCGTACCACGCCGGCAAGATTTTCACTTGCGAATGTGGTAAAACGTTCCAGCACAACACTAGTTATTTATCACACAAACGTTTGAACCACTCGTCGGAGATGACGGTATGTGAGTATTGCGGTGAATCCTTTATTGGAGAATGGGGTGTTAGAATGCATAAGAAGAAGATGCACGCAACAGAAGcgtgtaaatttaaatgtaataaatgttgtacaaggTTTAGAACAGATGCGGCTTTAGCGAACCACCACAGTCTGGGTTGTGGTGGATACAATTGTGTAAATTGTGGTGATGTTTTCACCACAGAAAACTTGCTCCAATACCATTTAGTTCAGAATCATAATCGTAGGAACAGTTCTGGTGGGATCAGTGAGTGTGCAAGCTGTCACACGAAGTTTCACAACGATGCAGCGCTCTGCAGGCATTTAGATGATCGGTGTGGTGAGGTGGTACCTTGTGTGCAGTGTGGTCGGAGTTTCACCACGGAAGATGAAATGAATGAACACCTAAATGTACACTCGACTGAGCAATTCAAATGCGAAGTGtGTAAGAAAAGTTTTAAGTCTCCATTCCACTTTGCGGAGCACTACGTCAGACATTCAGGCAATAGAGACCATGTCAGAGTCCCGAGGTATGAGAAGAGATCCAAACTTCGTCCACGCAAGGACGGGACTGATATACCAAAGAAAGTCATGTGCGATATCTGTGGGCAGTTGTGCTTGGAAACCGGTTATAAAACTCATCTCAGAACGCATACAATAGAGAATGATTACAAGTGTATCGTGTGCTCCCAGAGATTTTCTCTACTGCTTGCAttgaagTCTCATATGAGGGTACATAATGAGCAGAGGCCCCACCAGTGCAGTTATTGTGGCAAGAGATTCAAAATACGAGGCGCGCTAGTCAAACATGTTTTATTGATACACCGTGGAATTGAGCCACATCAGTGCCATTTTTGTAAGAAATACTTCAAAACGTCAGCTTCTGTGAAGTTACATATAAAGACGGTGCATACGAAGTCGTTCATAGCTTCTCCATTACGAGAATGCTCCCCGAATTCAGTAGAATAG
- Protein Sequence
- MDDKETSSDLLACRACLATDVRLYDIFKHDLSEHFRKLTRYQIKQRDGYPQYLCTKCAVQLRKVAAFVDMCKRGRDILQGVVISNIPITTDFIRNMDLEGHFFMNLVEKTLYNFSKGLHPNINDDNLANIIIKDNVAMVEDTADLNVINADETANASDSNDEICEEPVIVNLNENFDEVSNSDDENDDEIMYLNNDDDDSNNEYDEASITEDSKDMVATENGFSNDDAEYLTVIVTDEQLGPELDDMNLNDKNIKQILEDFVPYNNINNSDAAAVSDFISDNDDISNETSELPYLVARKKRKRKYEKKNIFINNKEFAERNNFKLTIFNRKQQMDEIRALIESPSTKFRCDQCGVGFNYKTKFLNHFKWKHDPSLGNFVCNICNTRFSQKRYLYNHKLFVHLFKYDCKLCKFTTRARHTAENHVAYHAGKIFTCECGKTFQHNTSYLSHKRLNHSSEMTVCEYCGESFIGEWGVRMHKKKMHATEACKFKCNKCCTRFRTDAALANHHSLGCGGYNCVNCGDVFTTENLLQYHLVQNHNRRNSSGGISECASCHTKFHNDAALCRHLDDRCGEVVPCVQCGRSFTTEDEMNEHLNVHSTEQFKCEVCKKSFKSPFHFAEHYVRHSGNRDHVRVPRYEKRSKLRPRKDGTDIPKKVMCDICGQLCLETGYKTHLRTHTIENDYKCIVCSQRFSLLLALKSHMRVHNEQRPHQCSYCGKRFKIRGALVKHVLLIHRGIEPHQCHFCKKYFKTSASVKLHIKTVHTKSFIASPLRECSPNSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -