Agri000612.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- PRDM14
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000017.1:835351-845971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0019 0.14 13.3 2.1 1 23 275 297 275 297 0.99 2 15 0.23 17 6.8 0.3 3 23 323 343 321 343 0.95 3 15 3 2.2e+02 3.3 0.7 1 23 365 387 365 387 0.96 4 15 0.0003 0.022 15.8 3.9 1 23 391 413 391 413 0.97 5 15 2.6e-05 0.0019 19.2 0.4 1 23 418 441 418 441 0.98 6 15 2.1 1.6e+02 3.7 1.6 2 22 449 469 449 471 0.85 7 15 0.00054 0.039 15.0 4.8 1 23 478 501 478 501 0.97 8 15 2.5 1.9e+02 3.5 0.2 2 11 508 517 507 521 0.85 9 15 0.6 44 5.4 3.0 2 23 658 679 657 679 0.96 10 15 0.026 1.9 9.7 0.5 1 23 683 705 683 705 0.98 11 15 6.8e-05 0.005 17.9 1.1 1 23 710 733 710 733 0.95 12 15 2.2 1.6e+02 3.7 1.5 1 19 739 757 739 762 0.78 13 15 0.0046 0.34 12.1 0.1 2 23 770 792 769 792 0.96 14 15 0.00075 0.055 14.6 1.6 1 23 798 820 798 820 0.99 15 15 1.6e-06 0.00012 23.0 1.3 2 23 827 848 826 848 0.97
Sequence Information
- Coding Sequence
- ATGGAAGACTCGGACGACACTGAAACGAAGACTTTCTATGGGAGATGTCTTTGTTGTATGGAATATGGGTATATGAAAGATATGTGGACCGAACACTCTTTTGAAGGAGAACGGGAAGTATATGGGGAGATGATAATGGAGACATTCTCCATAGTCTGTAACCAACCAGACAAAATGGAGCATATCTGTGAAATGTGCATAATGCGTTTACGGGAGTCGTTTAGTTTCAAAAAGGAGGTGCAGACATCCTTAGGAATGTTACTGGATGACTACATCAGTGATGAGAGTGATTTAGAAGAATCGAAGCCTATATTCTTAGAGGATTTCAAGATGTCTGATCATGAGGATAATGATATTCAAGAACCACAAACATTGTGTAAAATTGAGCCTGAATACGAAGAAATTGAGTATTTAGAAGAAGATGAAGCTGTTATAGCTACAGAGTTAATGAAACCAAAACTATCTACTGAAAAGGCGCCAGTCAAGAAGTGGCccaagaagaagaagaagagtgGAGATCTCAAAACTAAATACAAGAATTATACGGAGTCAGACATGAGGAAGTGTATCGAAGCTGTTCTGCAGAAGAAATTGTCTACGATGGAAGCGTCAAAGAAGTACAATGTACCTCGGAAGACCATAAGTGCTAGACTTACATACATGAAAAGCAAACCtgATGAATGGGAGAGCCAACATCACCCTACAAATGAACGAGTGTCGAAGCGGACACGAAATGTTCTACTACAAAAACACGTCGCCAACATAAAGGCCATATTACGATATACAAACGCAACACCATTCGCTGGCCCGGGCGGCTCGAAATACACGTGTTACTTCTGCAAACAAGATTACAATAAGCCGGCCGACTTGAAAACGCACACGCGGTCTCATAGCGATGTATTCGATTCGTTCCAAATTAAAGATTTAACGCATTTCCTGTTGAAACTGGATATAACCGGTTTGAACTGCTTATTGTGCCGACAAAGTATCAACAACATGGAGGATCTATTCGCACATTTGAAGTCCCATCGTAAACTCGTGTATACGGATATCAAACACCAAATTGTACCATTCAGCTTCACCGACAATAtctatagatgtttgttatgtAGAAGCGAGTATACGTTCTTCAAATTATTGTTGGGGCATATGATTGaacattatagtatatatagctgTTCTCATTGTGGTAAAGGATTTATAAATAAGCATACGTTATCTTACCATGAGGCTAGACACGATAAAGGTGTGTATAAATGCTCATATTGTGAGAAAGAGTTCGTATCTCGCGTCAATGTAAAAGCTCATGAACGTGTATTGCATAGACATAATAGTAAAACTAGGAAGTGTAGATATTGTGATGAGAGATTCATGAGTGGAGTCCAAAGAAACAAACACGAGGTGGAACATCACGGGGCTGATCAAGAGATATTCCCTTGCAATGTCTGTGACAAACAATTTACGAGCCAATTCTGCTTGACTGGACATATAAATAGATGTCATCTAATGTTAAAGAGGTTGCAATGCACAGAGTGTGATATGCGGTTTTACGCGAAGAAAGACTCAGAAGAGAATGAAAATAGACAGCAGTTCCTTGAGAAGCAATTCAAATTCATAGAAGAAACGAAGATTATCCTTACCTATACGAACGCCGTTCCGTTCAAGGTAAAAAGAACGAGATTATGTTGCGCCTTCTGTGACCCCAGCCCTATATTCGAGAGTCCAGAAGACCTAAGGCCCCACACCCTAGATAAGCATAAACACCAGATATTAAGCGAATTGGACTCTGTCCTGCGCCCTCATTGGATGAACGAAGTCATCAGGATAGATATAGAAAACTTGCAGTGCGAAGAATGTTCCTCAGAGATCCTAGGGTGGAACGATCTGTTCCAACATTTGAATGAAACACACAATATAGACTTGGATGAAGCGTACACTAGAGTAATTCCTTTCAAGCTAACGAGTGCTGTTCAATGCGCACTTTGTTCGATGACCTTCCAGCATTTCCATTTCCTCGACTCGCATATGAACGCGCATTACAACAACTACGTCTGCGCGGAATGCGGAGACGGCTTCGTTTCCGAATGTAGACTCAAAAAGCACAGGTTAATTCACAGCAACGAGAAATACCCCTGCAACGAATGCGGGAAGGTATTCACATTGAAGAAGTACAGACAGAAACATATAAACTTCGTTCATAAACACGAGAAGTTGTTTAAATGCTTGTACTGCGACGAAAGGTACAGCGCAGAACACGAACGACACCTGCATGTCGTGGAGAAACATAATGAGAAGGTGAAATCAATTACTTGCGAGTACTGCGGGGTCGTCTTCACCTGGAGACCATACTACATGGCGCATATAAGGAAAAAACACAACGATAACAAGAAATACAAATGCCTTTATTGTATGAAATCGTACGTGTCCAATTATGATCTTAAAATGCATGTGATGCGCCACACTGGGGAGAAGAGAGTGGAGTGTGAACATTGCGATAAGAAGTTCGTGACGAAAGCAGAACTGAGGAGTCATGCAAGAACACACAAGAACCTGATCACCGTGATGGAGACTCCGCCTGGTCTAGTAGTTATTCGGCCCGCATTTGACTCGTAG
- Protein Sequence
- MEDSDDTETKTFYGRCLCCMEYGYMKDMWTEHSFEGEREVYGEMIMETFSIVCNQPDKMEHICEMCIMRLRESFSFKKEVQTSLGMLLDDYISDESDLEESKPIFLEDFKMSDHEDNDIQEPQTLCKIEPEYEEIEYLEEDEAVIATELMKPKLSTEKAPVKKWPKKKKKSGDLKTKYKNYTESDMRKCIEAVLQKKLSTMEASKKYNVPRKTISARLTYMKSKPDEWESQHHPTNERVSKRTRNVLLQKHVANIKAILRYTNATPFAGPGGSKYTCYFCKQDYNKPADLKTHTRSHSDVFDSFQIKDLTHFLLKLDITGLNCLLCRQSINNMEDLFAHLKSHRKLVYTDIKHQIVPFSFTDNIYRCLLCRSEYTFFKLLLGHMIEHYSIYSCSHCGKGFINKHTLSYHEARHDKGVYKCSYCEKEFVSRVNVKAHERVLHRHNSKTRKCRYCDERFMSGVQRNKHEVEHHGADQEIFPCNVCDKQFTSQFCLTGHINRCHLMLKRLQCTECDMRFYAKKDSEENENRQQFLEKQFKFIEETKIILTYTNAVPFKVKRTRLCCAFCDPSPIFESPEDLRPHTLDKHKHQILSELDSVLRPHWMNEVIRIDIENLQCEECSSEILGWNDLFQHLNETHNIDLDEAYTRVIPFKLTSAVQCALCSMTFQHFHFLDSHMNAHYNNYVCAECGDGFVSECRLKKHRLIHSNEKYPCNECGKVFTLKKYRQKHINFVHKHEKLFKCLYCDERYSAEHERHLHVVEKHNEKVKSITCEYCGVVFTWRPYYMAHIRKKHNDNKKYKCLYCMKSYVSNYDLKMHVMRHTGEKRVECEHCDKKFVTKAELRSHARTHKNLITVMETPPGLVVIRPAFDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00007954;
- 90% Identity
- iTF_00007954;
- 80% Identity
- iTF_00007954;