Agri022933.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000462.1:90524-100923[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.054 4 8.7 1.3 1 23 242 264 242 264 0.94 2 11 0.071 5.2 8.4 0.8 1 23 270 292 270 292 0.98 3 11 0.067 4.9 8.5 3.8 1 23 296 318 296 318 0.97 4 11 0.008 0.59 11.3 2.0 1 23 322 345 322 345 0.93 5 11 0.00033 0.024 15.7 3.2 1 23 348 371 348 371 0.97 6 11 0.0066 0.49 11.6 2.4 1 23 374 396 374 397 0.95 7 11 0.047 3.5 8.9 0.1 3 20 407 424 406 426 0.92 8 11 0.00034 0.025 15.7 0.1 2 23 439 461 438 461 0.94 9 11 9.7e-06 0.00071 20.5 2.0 1 23 467 490 467 490 0.97 10 11 2.6e-05 0.0019 19.2 0.5 3 23 501 521 500 521 0.98 11 11 0.00064 0.047 14.8 0.5 1 23 527 549 527 549 0.98
Sequence Information
- Coding Sequence
- ATGGATGAATTAGAAATAAAACGTGAATATCTTATTGATGAAGAATTGCTATGTCGAACTTGTCTCAGCGTCGGTCGGAGACTCGTACCGCTGGAGAAATATTTCCATATTTATATGCAATTGTTTCCTGAATATGAATCTGCAGTGAATACAAACCAACTACAAGTGTGTTGGGAGTGTGAAAGGCTGTTATCTAAAGTCATAAAATTCCAGCATCATGTACGCAGAGCCAATGAATTGCTGCAGATGGGTCAGaatattaTCTATGCATCCCTCTCCAACCTGACAACGGTAATAATAAATGACTCCCATCCACACACAATATATGTGaaccaaacaaacatacaatcatacatagaaacaaatgaaaataatgaaattaattcttTTGATGGCATCGATAATgaagatttaaatgaaatagactTTAAAAAAGGTGATTTAAAAACAGAATTGAATGACACTGGCTTGGAATCAAATACAACATTAAAAGAGTTTAAAACTGAACTGAAATGCACAGAAGATGAACTAGAAAAAAATGTCAcagataaaaaatctaaatctaataataaatgggCTAAGAAGCGTGCGCTACAGAATAAAAaacctaaatttaaaattatcgaAAGTGATAAAGCTTTTATAAAAGTACAAATAAGTCCAGAGGACTTGAGAGAGCATATAGAGAGTGAAAGAGTTAGAGGGAGTTATAAaatgaacagatttaaatgtgAGACTTGTATGATGGGATTTAATAAAGAAAGTCAACTTAAAAGTCATAATGTTAGACATGATAAGGGGCGGCCGTACATTTGCGACGTATGTAATACTAGCAAACAGGACAAGAGACGTCTATCCGCACATATACGAAAAcattactacaaatatatatgtttattatgtaaaatcaCGTGTTATGACAGCAAGCATATAAACTCCCACATGAAAGGACATAAGAAAGCGTTTGAGTGCTTGAAATGTGGACTTAAATTTGGaaGCCGTCGTGAGTTCTTCAAACACTTCAAGGACTGGCATGAGAAATTCATTTGCAATTACTGTGGCATTAGTTTTAAGATGCGGTACTGCATTAAAGACCACATCAGAAAACAACACAGCCCATTTGAGTGCAAGCCGTGCAATAAGCGCTTTGCTAGATACAACGGCCTCTGGCTTCACAACAAAACGCATCATATGGAGAGTCCACCAGCCGCCGCTTACTGCGTCGAGTGCGACAAACGCTTCGCCGACATCTACAGATACAGATGGCATTTGGCAAACAGCGCTAAACACAAGCCAGTCAAGAAGGTGAGAGTGCCGTGTCCGGACTGCGAGAAGGTGTTTACAAAGAATATCTACATGAGAGATCACTATAATTTGGTGCacttaaagtattataaataccattGCGAGCAATGTGACAAGAATTTCATACGCAATGCAGACCTGGTGAAGCATAAGCGTCGCATCCATGACGGCATACTGCCGCCACGCAATAAGATCTGTTACATATGCGGCAAAGGGTTTACGacaaaTAAGATATTAACAAATCATATACGCACTCACACGGGGGAGCGTCCGTTTTCGTGCGCACAATGCGGCGTCCAGTTCGCACATCGAGCGGCCTTACACGCGCATGGACGCGTCCACACCGACACACTCACGAGGGCAGAAGGAACCTAG
- Protein Sequence
- MDELEIKREYLIDEELLCRTCLSVGRRLVPLEKYFHIYMQLFPEYESAVNTNQLQVCWECERLLSKVIKFQHHVRRANELLQMGQNIIYASLSNLTTVIINDSHPHTIYVNQTNIQSYIETNENNEINSFDGIDNEDLNEIDFKKGDLKTELNDTGLESNTTLKEFKTELKCTEDELEKNVTDKKSKSNNKWAKKRALQNKKPKFKIIESDKAFIKVQISPEDLREHIESERVRGSYKMNRFKCETCMMGFNKESQLKSHNVRHDKGRPYICDVCNTSKQDKRRLSAHIRKHYYKYICLLCKITCYDSKHINSHMKGHKKAFECLKCGLKFGSRREFFKHFKDWHEKFICNYCGISFKMRYCIKDHIRKQHSPFECKPCNKRFARYNGLWLHNKTHHMESPPAAAYCVECDKRFADIYRYRWHLANSAKHKPVKKVRVPCPDCEKVFTKNIYMRDHYNLVHLKYYKYHCEQCDKNFIRNADLVKHKRRIHDGILPPRNKICYICGKGFTTNKILTNHIRTHTGERPFSCAQCGVQFAHRAALHAHGRVHTDTLTRAEGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -