Agri015267.3
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000281.1:700322-703013[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.45 33 5.9 0.5 1 21 215 235 215 236 0.93 2 18 0.0042 0.31 12.2 0.7 2 23 250 271 249 271 0.97 3 18 0.0011 0.079 14.1 0.3 1 23 301 324 301 324 0.98 4 18 0.23 17 6.8 0.2 2 23 379 401 378 401 0.95 5 18 0.0023 0.17 13.0 4.4 1 23 407 430 407 430 0.97 6 18 1.6 1.2e+02 4.1 0.1 1 20 434 453 434 455 0.89 7 18 0.0064 0.47 11.7 3.5 1 23 463 486 463 486 0.98 8 18 0.0022 0.16 13.1 1.2 1 23 491 514 491 514 0.96 9 18 0.00015 0.011 16.8 0.2 2 23 527 548 526 548 0.97 10 18 0.0058 0.43 11.8 0.9 1 23 554 576 554 576 0.98 11 18 3.8 2.8e+02 2.9 0.4 2 12 582 592 581 594 0.83 12 18 0.00032 0.024 15.7 0.4 1 23 612 634 612 634 0.97 13 18 0.94 69 4.8 0.3 2 23 639 660 638 660 0.91 14 18 0.00069 0.051 14.7 0.6 2 23 675 697 674 697 0.96 15 18 6.1e-05 0.0045 18.0 3.7 1 23 703 725 703 725 0.99 16 18 4.3e-05 0.0031 18.5 1.9 2 23 732 753 732 753 0.97 17 18 0.0031 0.23 12.7 0.7 1 23 759 782 759 782 0.93 18 18 0.014 1.1 10.5 0.5 2 23 788 810 787 810 0.96
Sequence Information
- Coding Sequence
- ATGACTGAGGAAGTACTGGATCAGTTCGGAATGAAcgaatctaatataaaatatataatacaaaaactcaAAAGTTTATGTCAAAATACCCAATTCTGTGGTATTTGCCTCgcgaatgatgaaaatctgtggACTATAGATACAGAATTTGATATAGTCATGAATAATAATTCgcataaaaaactaattaaggATATCGTGTACTATGTTTTTAAAGGAGATGCTAAAAATATCTTAGCAAGTCCTTTCATTTGCAGTCACTGCTCACAAAATGTAATACAATGCTATCTATTCATTTACAATACTATAAAATCATctgaaatacttaataaatatatcgaaGACTTGTCTATAAAGATTACAGatttaaataatcaattaacATCTGATGGAGAGTGTGAAAATTCAAATGTTCTAATAGTATTACAAGAAAATgaagatatagataaatatgtagatataagaGCTGTAACTGAAGTTGTTGCAATAGAATCTTCGtctaataatatagaaaatgctgaaacaaatacaatatatgaaaataacaaaaaatcagATGCAATCaaggtaaatataatacaagaaataaaattaggttCACAATTGAAGAAAAGAAAACTAAAGAGATTGAAAAACAGAATTTACAAATGCATGAAATGTAAAAGAGTCATATCTACTACAAAGAAGTGGTTGCAACACGAGAGGGTGTGCCAAATTTCAAGAAGAACGGAAAAAATACAACCGTTGCAATGCAAAATATGTTATGAAGTATTAAAGACAAAAAGACTTCTATCGTTGCATTACAAGATACACAATAAAGCCAGATGTAGACTCTGTTTTAACATTATGCCAGAAGAAAATTTTCTGGAGCATTTAAAACTGAACCACGAAGATGATATATATGAATGCGAAGTCTGCGATCGCATATTATATTCATCTTTAGCTCTAGAAACGCATATGAAGAAAAAACATGGCGATCCACAATGTATCATgtgtttaaaacattttaaagaaGCAGACTTAAAGGTTCACAAGTGTAAATATGGATGTTTAGACTGCAGAGAGGTGCCGTGtatgcattataaatatttagtctCCTATAGAGAACAAATGATGAACGAAGCTACTAAAATTATGTGTTTAGATTGTGACTACATATGTCCAAAAAGAGAAGCGTTGCTTGGACATGTGAATCGTGAACATTTAGATCACCATCCCTTCACATGTGCGCATTGTTCTCAGCAATTTTATTCGAAAGTTACATTAAGGAATCACTTAAATCGCTTCCATAGAGAAAACTTTATGTGCCAGTTTTGCGATTTGGACTTTAAAATTAAGGCCACGTTTGACGAACACGTTGAAATCTGCAAATGGATCAAACGGCAATACAAATGCGATGTATGCACATCCTCGTTTCACACTGAAGAGCAATTGTCGAATCACAAAAATACTAAACACGCTGTAGGTGTATATCCTtgcaatttatgtaataaacaattttacacaatactaaaattaaaagaacACATGTTCAGAATACACAATGGTATACAGTTGAAAAGAAGAAGAACCAATTTGGAGTGTCCGATGTGTGGAATTAAGTTTGATGCTAAAAAGGAATTGATGCATCATATAGCAACCCACGGACCTGACGCTAGATTCCCTTGTAAAATTTGCAACGTTGATTTTGacgatataaaaaaactacacgCACACAGCCGCATGCATTGCGATGACGTCATCAAATGTACTGATTGTAACAAGCATATAACAACAGCATTTTTTCCACAACACAtgatttattgtaatgtaaataagaACACTGATAGTCAATACGAATGTGAGACTTGCGGTAAAACGTTGCAAACAGAATCAATGTTAAAATTGCATAGACAAGCTCATTTAGAGCCCGTAGAGTGTCCAATctgtagaaaattaataaaaccaaTTTATTTAAAGAGACATTTAAAGTACACGCATACACAGAAGAGAGTGAAACCGAAAAAGAACCTAAAGGTAGTGAAATGCGATTGGTGCGGACATATGGTAACTAGGAAAGGGGAGCTGGAGTCGCACGTTAACAGGTTCCATTTGAAAATAAAGCCTTACGAGTGTAACATGTGTAAGAAGACATTCTGTGGGAAGGAACGACTGAAAGAGCACATCCAGACTCATTCCACACAAAACACGAGATACTGCACCATCTGTGGGAAGAAATACGCGAACAGCGTGTGTTTGAAGATGCATCAACGTATACATTCAGGTGTTACGCCGTATGAATGTGATGTATGCGGAGAGAAATTCAGATCATCAAGTATAATGAATACgcataaaataaagaaacatacAGAAAAAACTATACGTTGTCCATTGTGTGACACAATGTTTTATTTGGCTAGGGAGATGAGGAATCATTTTAAGAAAGTTCATTGGAAGAATAAGGATAAGAAATTTGATCCGCGTGATGTGAAAGAGCTGGgaaaggaatattattatttattcgaaGATAAAAGGCAACCAAAAGTAGATGAGAATGAATTGGtgctgtattaa
- Protein Sequence
- MTEEVLDQFGMNESNIKYIIQKLKSLCQNTQFCGICLANDENLWTIDTEFDIVMNNNSHKKLIKDIVYYVFKGDAKNILASPFICSHCSQNVIQCYLFIYNTIKSSEILNKYIEDLSIKITDLNNQLTSDGECENSNVLIVLQENEDIDKYVDIRAVTEVVAIESSSNNIENAETNTIYENNKKSDAIKVNIIQEIKLGSQLKKRKLKRLKNRIYKCMKCKRVISTTKKWLQHERVCQISRRTEKIQPLQCKICYEVLKTKRLLSLHYKIHNKARCRLCFNIMPEENFLEHLKLNHEDDIYECEVCDRILYSSLALETHMKKKHGDPQCIMCLKHFKEADLKVHKCKYGCLDCREVPCMHYKYLVSYREQMMNEATKIMCLDCDYICPKREALLGHVNREHLDHHPFTCAHCSQQFYSKVTLRNHLNRFHRENFMCQFCDLDFKIKATFDEHVEICKWIKRQYKCDVCTSSFHTEEQLSNHKNTKHAVGVYPCNLCNKQFYTILKLKEHMFRIHNGIQLKRRRTNLECPMCGIKFDAKKELMHHIATHGPDARFPCKICNVDFDDIKKLHAHSRMHCDDVIKCTDCNKHITTAFFPQHMIYCNVNKNTDSQYECETCGKTLQTESMLKLHRQAHLEPVECPICRKLIKPIYLKRHLKYTHTQKRVKPKKNLKVVKCDWCGHMVTRKGELESHVNRFHLKIKPYECNMCKKTFCGKERLKEHIQTHSTQNTRYCTICGKKYANSVCLKMHQRIHSGVTPYECDVCGEKFRSSSIMNTHKIKKHTEKTIRCPLCDTMFYLAREMRNHFKKVHWKNKDKKFDPRDVKELGKEYYYLFEDKRQPKVDENELVLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -