Agri000629.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000017.1:964264-974268[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.8e-05 0.0072 17.4 0.4 1 23 8 30 8 30 0.96 2 19 0.22 16 6.8 0.1 1 19 143 161 143 163 0.96 3 19 0.066 4.8 8.5 1.1 2 23 193 215 192 215 0.94 4 19 0.61 45 5.4 0.2 7 23 245 261 237 261 0.81 5 19 0.0022 0.16 13.1 0.1 1 20 265 284 265 287 0.94 6 19 0.0031 0.23 12.6 0.1 1 23 292 315 292 315 0.95 7 19 0.06 4.4 8.6 7.1 1 23 323 346 323 346 0.96 8 19 0.01 0.74 11.0 0.8 2 23 354 375 353 375 0.96 9 19 0.0014 0.1 13.7 3.0 1 23 381 404 381 404 0.94 10 19 8.5e-05 0.0062 17.6 2.7 1 23 410 432 410 432 0.98 11 19 0.0073 0.54 11.5 0.1 1 23 541 564 541 564 0.90 12 19 1.1 80 4.6 0.7 2 23 636 657 635 657 0.95 13 19 0.00073 0.054 14.6 0.2 1 23 661 683 661 683 0.97 14 19 0.0023 0.17 13.0 0.3 1 23 688 711 688 711 0.96 15 19 5.7 4.2e+02 2.4 2.4 2 23 720 742 719 742 0.86 16 19 0.0013 0.097 13.8 1.6 2 23 750 772 749 772 0.95 17 19 0.0013 0.096 13.8 0.3 1 23 778 801 778 801 0.90 18 19 6.1e-05 0.0045 18.0 3.2 1 23 807 829 807 829 0.98 19 19 0.00099 0.073 14.2 0.3 1 23 835 858 835 858 0.98
Sequence Information
- Coding Sequence
- ATGAGAGTGCATTGCAGGAATTATGTATGTGAAGAATGTAATGAGGGATTTATTAATTCCACTCAACTGCGAGTCCACAAGAATTTCCACGAGGCTGGTGATCAAGAATTCATCAAAATTGAAATCAGAGAAGTTCCGACAAAGAAAGTAGCGTTAACAACAGATTTATCAGATGACGGTAAAGATAGAAATGAAGATTACTATCTCATAGTCAATAATCCGAATGATGATCTTGATAAAAAAGTAGGTAGAAAAGTGagaggaaatagaaatagaaatactgtAAAATCAGAAAAGGTTGTTCGGAGCAATGACGATAAAAGAAAGAATGTTGACAGAACGGTAAAAAGTAAACATCTTTGTAATGTAAAAGCGATTCTTGAGAATTCTAACGCAACTATTATTAGGCATCGTAGCGCGATTGGGTACTCCTGTGTTTTTTGCACCGAGCAATATGCCGATGCAGCTGATTTGAAGAGCCACTCCTTGGAAACATATGACCCTGTAGGTCTCCGTTCTTACATAACTGCCATGGCGATGAAGAAGTACATCATTAAAGTAGACATCACAGGTCTCTGCTGCAAACTATGTCAAACCAGCATCAATTCTTTAGAGAACCTTATGGAGCATCTGCAAAATATACACAACGTTATAATATACACTGACATCGAAAATCATATAGTACCATTTAAATTCGATACGAAAACCCTCACGTGCGCTATATGTGTAAACggaataacattttataaattcaagTCCCTATATGAACATATGAGAGTGCATTACAGAAATTATGTATGCGACGTATGTGATGAAGGGTTTATTAATTTTCAGCAATTGAAAAATCACACGCCTATCCACGAGTCTGGGAACTTTGCATGTGAAACATGCCCAAGAGTTTTTAACAGTGATTTGAAATTGAAAGCCCATGTGCGGGCTGTACACGCCGGGAAATCAAATCCTGGACATAAATGCGGCTACTGTAATGAAGTGTTTAAATTTCACCACACAAGAGAAAAGCACTTGCGTGAAGAGCACGGTGTTAATATAACTCCAATTACTTGTAAAGCTTGCGATAAAACGTTTCTCTCTCGTCCTAGTTACACAAAACATATGTACGTACATCTGATGTTACGTCCACATGCATGTAATTTGTGCGATAAGACGTTCGCTTATACAGATAAATTGAAGGAGCATCATGAGAGAGTGCATTTGGGATTAAGGTTGCACAAATGCGAAGTGTGCCTCAAAACTTTTTCAGCGAGGAAAACGTTGAAACAGCACATCCGTATACATACAAATGATCGTGACCAACATCAAGGATTCATTAAGAACGAATTCCTACAAGTGGTAAAGACAGTAACTAGAGAAGGAAATCAAGATTGCACTCATATAATTGATAAACAAAATGCTATTGATGgcgaaaataaaaaagaaacgagATCATCATTAATTGTAAAACGAAATAAAGTTGTTAATAAAGCAAAGACAGAAAAGGTTCGGAGAAGAGACAAAATTAATGATAGCggcaaaaacataaaaaaagaacatattACTAATGTAAGAGCGATTCTAGAGAACTCTAATGCAACTATTATTAGGCATCGTGGTGGAATCGGGTACGCCTGCGGTTATTGTACCGAACAGTATCCTGATGCCGCTGAATTGAAGAGACACTCCTTGGAAACGCATAAGAATGTCCGTCTATGTTCATTTGTAAATAACATGCCAATGAGTAAATGCATTATTAAATTGGACATCACGTCTCTTTGCTGCAAACTATGCAACAGTAACATGAATTCTTTGAACGAATTGATGACACATTTGCAAAATATACACgaaattaaagtatttacaGATATCAATAATCATATACTACCATTTAAATTCGATACGAATGTACTCACATGCGCTGTTTGCGCAAACGCATTCCATAAGTTTAAGTCTCTCTTGGAACATATGACAGTACATTACAGGAATTACGTCTGCGAAGAATGTGATGCAGGCTTCATTAATCATATACAGCTGAGAAATCACAAAGCTATCCATGAGTCTGGGAACTATACTTGTGAAACATGTGCAAAAGTCTttaataatggtaataaattTAAGGCTCACGTGCGAGCAGTTCATGTTAGGAAACAACAGGCTTTAAGCAAATGCGGCTATTGTAAGGAATCTTTTCTCTACTTCCACACGAAGGAAAAACATTTGCAAGAAGTACACGGTGTTAATATAGTTAGAATTAAGTGTCAGGCATGCGACAGATCGTTCTTGTCTCGGTCGAATTACACGAAGCATATGAAATTGAACCATCTTATGGTTCGACCGCATTCGTGCGGTCAATGCGACAAATCGTTTGCTTATTTGGCAGCTCTAAAAGAACACGAGGGGAGAGTGCATTTGGGATTGAGAATGCACAAGTGCGATGAGTGCATCAAGACGTTTTCAACGAAAAAATCTTTGCAGCAACATGTTCGTATACATAATAACGATCGTAGATTCAAATGCAGTCTTTGTGGGCAGGCGTTCATAGCGAAAATTAGCTGGCGAGGACACATGAGATCCAAGCATGGAATGATGATTTAA
- Protein Sequence
- MRVHCRNYVCEECNEGFINSTQLRVHKNFHEAGDQEFIKIEIREVPTKKVALTTDLSDDGKDRNEDYYLIVNNPNDDLDKKVGRKVRGNRNRNTVKSEKVVRSNDDKRKNVDRTVKSKHLCNVKAILENSNATIIRHRSAIGYSCVFCTEQYADAADLKSHSLETYDPVGLRSYITAMAMKKYIIKVDITGLCCKLCQTSINSLENLMEHLQNIHNVIIYTDIENHIVPFKFDTKTLTCAICVNGITFYKFKSLYEHMRVHYRNYVCDVCDEGFINFQQLKNHTPIHESGNFACETCPRVFNSDLKLKAHVRAVHAGKSNPGHKCGYCNEVFKFHHTREKHLREEHGVNITPITCKACDKTFLSRPSYTKHMYVHLMLRPHACNLCDKTFAYTDKLKEHHERVHLGLRLHKCEVCLKTFSARKTLKQHIRIHTNDRDQHQGFIKNEFLQVVKTVTREGNQDCTHIIDKQNAIDGENKKETRSSLIVKRNKVVNKAKTEKVRRRDKINDSGKNIKKEHITNVRAILENSNATIIRHRGGIGYACGYCTEQYPDAAELKRHSLETHKNVRLCSFVNNMPMSKCIIKLDITSLCCKLCNSNMNSLNELMTHLQNIHEIKVFTDINNHILPFKFDTNVLTCAVCANAFHKFKSLLEHMTVHYRNYVCEECDAGFINHIQLRNHKAIHESGNYTCETCAKVFNNGNKFKAHVRAVHVRKQQALSKCGYCKESFLYFHTKEKHLQEVHGVNIVRIKCQACDRSFLSRSNYTKHMKLNHLMVRPHSCGQCDKSFAYLAALKEHEGRVHLGLRMHKCDECIKTFSTKKSLQQHVRIHNNDRRFKCSLCGQAFIAKISWRGHMRSKHGMMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -