Agri023645.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000467.1:7423272-7431606[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 8.7e-05 0.0064 17.5 2.2 1 23 197 219 197 219 0.99 2 30 0.00035 0.026 15.6 0.4 2 21 251 270 250 271 0.92 3 30 2.8e-06 0.00021 22.2 0.7 3 23 309 330 307 330 0.96 4 30 0.0039 0.29 12.3 2.9 1 23 383 406 383 406 0.98 5 30 0.0028 0.2 12.8 0.2 1 23 425 447 425 447 0.98 6 30 9e-05 0.0066 17.5 1.6 2 23 487 508 486 508 0.96 7 30 0.00045 0.033 15.3 2.3 2 23 555 577 555 577 0.97 8 30 0.0001 0.0077 17.3 0.2 1 23 627 652 627 652 0.95 9 30 0.00039 0.029 15.5 0.1 1 23 718 740 718 740 0.97 10 30 0.037 2.7 9.3 6.0 2 23 752 773 751 773 0.96 11 30 0.043 3.2 9.0 1.8 2 23 785 806 784 806 0.96 12 30 0.0077 0.57 11.4 1.1 1 23 816 838 816 838 0.98 13 30 0.02 1.5 10.1 6.9 1 23 867 889 867 889 0.96 14 30 0.0004 0.029 15.5 2.0 1 23 900 922 900 922 0.98 15 30 2.9e-05 0.0021 19.0 0.6 1 23 930 952 930 952 0.98 16 30 0.0035 0.26 12.5 0.1 2 23 972 994 971 994 0.97 17 30 1.1 82 4.6 0.9 1 23 1012 1034 1012 1034 0.91 18 30 0.31 23 6.4 3.5 1 23 1041 1063 1041 1063 0.96 19 30 0.011 0.82 10.9 2.6 2 23 1074 1096 1073 1096 0.95 20 30 0.0007 0.051 14.7 0.5 1 23 1118 1140 1118 1140 0.97 21 30 0.59 44 5.5 1.5 2 20 1144 1162 1143 1164 0.92 22 30 0.0031 0.23 12.7 0.2 2 23 1221 1242 1220 1242 0.95 23 30 1.8 1.4e+02 3.9 2.0 5 23 1252 1270 1249 1270 0.94 24 30 0.018 1.3 10.3 0.9 2 23 1281 1303 1280 1303 0.95 25 30 0.25 19 6.6 2.9 2 23 1320 1338 1320 1338 0.91 26 30 0.17 13 7.2 1.0 2 21 1342 1361 1342 1362 0.93 27 30 4.1 3.1e+02 2.8 0.7 2 23 1411 1432 1410 1432 0.93 28 30 0.00057 0.042 15.0 0.9 2 23 1443 1465 1442 1465 0.96 29 30 4.4 3.3e+02 2.7 1.0 2 23 1481 1499 1481 1503 0.66 30 30 4 2.9e+02 2.9 2.2 3 20 1504 1521 1502 1523 0.91
Sequence Information
- Coding Sequence
- ATGGCCCTCAAATTGGGGAAATGCAGACTCTGTCTGAAGCTTGGAGATTTCTACTCCATATTCACCGTCGATAATGCTGTTCAGTTGGCCGAGATGGTGATGGAATGTGCGCAAATAAAAgtGTTTGAAGGTGATGGGCTACCAGATAAGATTTGTTCGGAATGCATTCAGAAATTAAGCAGCGCGTACATATTCAAGCAGCAGTGTGAACGGTCTGACCAAGAACTAAGACGGAACTATGTCCCGCCACCAGGATTCAGTGACACTCCCCCGCCGACCAACAGACAAAGCAGTGATTCTGCATTCTCGGGACACACCGACAACTCCAGTCAAGCCAAACCGTCTTCGTCGACTGACGGCAAAACACCGACCAACCGTAACCGTAAACGCAGTCATGGCAGTATTGACAATGTCTCAGTCACAAGTCGAACGCACGACAGACCCAGCAGTACCAAACGGGTTGAAGAGCTTAGAAAATCTCAGAAAAGGGCCAGGCACCAGTCAGAGAATACCGATTCCGATTTCGACTACAGTGCCTCTCAGTTCTCGGCCGAAACTGACTCCGATGAGCCTCTGATGAAACCAGAATATAAGTGCGATAAATGTGACAAGACATTCAAATCCATCAAGAGTCGCTCGGCGCACATGAAAATACATAGCGGCGAAAAACCTACATATCTTGCTGCAAATGCCGTTGTCAATATTCCAAGGAAGCATTTAGAGGACGCTTCAGACTCGGACAACAAATTAAATTGCGAGAAATGTggaaaaacatttaaattaaaaattatgctgAAGCGGCATTTAGAGTCATGCGACACTTCTCCACACCAGTACCagctaaataaatttgaaaaatcaCCCCAGAAAGAACTGTTAGTGTCATTGGAACCGATTGATATGCTGCAAGTGCGGAGACTGGATTGTGAGATATGCACTACGAAATTCAAAACCCTTGACAACTTACGCAAACACATGCGTGTAGTGCATGCCGCTGTACTCAAAAGGGATCACGCTGACTCAGATGTTGAACAGGAGAATGGGATAACCTCTGTTCCCTGTTTATATTGCCACAAACAGTTTCTAGATTATTACGCACATGGTGAACATTTTAGCAAATGCCCACAAAAGAAAGAGATGGACAGTTACAAATGTCCTATATGTCacaaagttttaacaaaaacctgtgcatatattattcatttaagaAGTATGCACTTTGGACAGCCGTTATTGAACCAATCAATGGAAGAGACATCATACCCAGAGGTTTTTGAATGTCGCATGTGTAGTAAGAAATTAGCAAGTCAAGAATTGCTTATTACACATTTAGCTACTCACATGTCTAATATAGAAGAAAACGCCGCTATGGATAATGACTCTAGACCCAGTACACCAGATGGTGCAATATCTGTTCATTCATCATACAGCAACACATATGCACCAAAGGGTCCACTGAATTGCAAACTATGTGACaagtcatttaaatataaaaaagctcTAGAAACACATGAAATGAAACATACAACTGGAGCGATAGAAATAAAAGTAGAGCCACCTGACAAGACAGCGTCAACGAGTCTATTGTCTGAGTCTCGGGGACAATTGCCACACGCTGATGAATCCGAGTCAGAGTCTAGTCATGATGAAGGCGAGGATAACACGTGCGATATCTGCGAAAAGCAGTTTTCTTACAAACGTTTGCTGCTGCAGCATAAACGAACGAAGCACAACATGAGTTCCGGTACGAAACGAGCGAAGATTACCTTGAAGGACTGCTTGGTCCGTTGCTTGATATGCGACCTTGAAATGAAAGTGAGCGCAATCAACGAGCACAACCAGAAGCATATATCAGTTAATATAAAGCCAAGGAACATGTACACATGTGGTGTACCCGATTGCGGAGAGAAATTTAAGAGTTGTAGCGCATTGGCGAATCACATAAAATTAGTACACAGGCTGAAGCAACAGCCCAAACAGTCACAGAAGCTCCCAAGGCTAGAGGGTGGGACAGATCTGGCGGATTTTTGCGAAGTCGTTGTGACTAAAACGGAACCCCTGGATACGCTCCAGAGTCACAACGGCTTTGGGGAGGTTCCAATTAACAATGGCGGTGAGCAAGCATCCAGTCCGCTGGTCAATATGAATGGGTTCACATGCACAATATGTGGGAAGGTGATGGCCACACTGGTATCGCTAAAGCGACATGTCAACTGGCATACCAATGTTGGGAACAATATAGAGAAATCAATTGAGTGCTTCGTTTGTAAGGAGAAATTTCGATTCCAGTGTCACTACAAACTTCATATGCGCGAACATTATCGTGACACCAACCTGGATCCAAAACTACTTACTTGTACTATTTGCAACCGTAAGAGTAAGCATTTAAGGGCGGCACAAGCTCACATGAATTACCACAAACAAACTCGGTTCAAGAACAAGGACTATCAGTGTTCTATATGCAAAAGAGTATTCCAGTTTAGGAAGGTGTATCTCTCCCACATGGCCATCCACTATAAGCGAGGTGAGAGTGTCCAAAACACAATTGTAGGGGACGTAACACCAAACAACATTGACAGGACTATCTTTGATGGCACACATACATGCCACCTTTGCAACAAAGTGTGTGACTCAGAGACATCACTAAAACATCACATTATATGGCATAAATCGAAAACATCTCTTTTTGGGGCTCGACACGAATGCTATATTTGCCAATTAGTCTTCACAAATAAAAGGCGATTGGAATTACACATCAGAAGTCACTATGAGGATGATAATGGTCcatataaatgtcaaatttgtgGTAAGGGCTACATAGATGAGGAATACTTCAAAAGGCATCTCAAAGGTCACAATTTTGACCATCAATCGCACAAGAAGAGAATTGAAAAGCTCAGGAAAGACAAAGTGAAATGTCCTATTTGTGCACGTTACTACCCAGATTTGGTGAAACTGATTCGCCATTTACGGCGTACTCATCCAGAGAGCAAGATGATCAAGGAAGACCCTGATGCACCACCACCCATGTATTATTCTTGCAAATTATGTGCAAAGGTATTCTTGGATGAAAGAAGACTACAACACCATGAGGAAGCCCATTTGCGGAAGCCAGAATTCTTCAAATGCAAATTCTGTGGTAAGAAAACTATCTCCCTTAAAAGTCACAGAGTTCACATCAAGGCACACTTGTGTGAAAAACATTTGGACAATCCACTGCAGTGTCCTCACTGTGAAGAGACATTTATTAAGGGGTATGGTCTCCATCACCATTTACGGGACGTGCACGGTATCGAGGAAACTTGGATCGCCGAGCGCCAAGAGCAAACATTAGATGGGCCGCTGCAAGAATTTCAATGTTCTATATGCTTTAAAATATTAGCCAGTAAAGGAAATTTTGAGAGACATATTGACTATCATAACTCTTTAAGATGTAACTACTGTTTTGAATACTTCAGCACACATCGATTCCTTGAAGGTCATTTATCGTTCAGTTgcgaaaagaaaaaaataatagggGACTGTGAAATTTATCCCAAAAAAGTGAAGTGCCATGTTTGTTACAAGGCCTTCCATTTGCAAGTCAAGTTAGATTGCCACTTACGGACTCAACACAACATCAAAGTAAACAAGGAAGCATCTTTGGGCAGAAAAGACATAGTGTGCGATTATTGCTTCCGCGCGTTCGAAAACGAGGACGCGCTAACTACTCACAAACTGTATCACCGTACGATTGGGTATTATGGTTGCATTTACTGTAAAAGAAAATTCAATACTTTGACAGTCTATCGAAAGCATAAGAATTACCATTACGCTCAGCTAAATGTAGACAATCCGACCAAGTGTGAACACTGTGATGAGACATTTGTAGCATTCAGAGAGATGATATACCACATGCGAGACGAGCACGGCGACAACAAGGAATGGATAGTACTGCCCAAGGAGTCTATTGAAGAGAAATGTCCCATTTGCAACAAAATATTCTACAATTTACACAAACATCTTACTTACCATGAGGAGAACAGATGCAAAAAGTGTGGCGAATATTTCTACTCAAGAGTCGACTATGATAATCACTTGTGTGCTATCGAAAGCGACGATGACGGAGTGGAAATCGTCGATGGCACTGTCCAGCCAAAGTATGAAGAGTGCCGGTTTTGCTTTAAGCCTGTAACAAGGAAGAACAGCAAACGTCTTCACAATCAGATACACCAAGTATCTGGCGCAATCTCATGCCGTTTCTGCTTGCTGAAGTTCAAGACGATGGAAGCGTTCAATATTCACGCATTTTCGCACAGAAGTCGCAAGTACAACAAGAAGCCCATAAAATGTAGAAAATGTGGCGAGAAGTTCGTTAAATATGGTTTATTTATAAGACATATGAAAAATGAACATAAGTCATTGAAGAAGATGCATTATCGCGCAGTTGTGAAGGCTGAGCGGTGTGTCGTCTGCGGCGAGGACTTTCCGAACCTTCACAATCATTACCGAGCACATTTGCAGAACCATTGTCTAAGttgcaataaatatttcacTTCAATGAAATTATTCACTCAGCACGCGTGCGACAAAGAAGATTCTGATCCATCAAAAGTGTTTACTTGTGATGAAGATCTAGTCGCTCTTATTAATTCTTATGTTCCTAAAGATGAGAAAGACGACGAGAAGTATTATGGATACAACGACGACGAAGAAGAGGAAGAACAATTAGAAGAGAATAAGTCTCAGCAGGTTGAGAGTGAACCAATTGATGAAGAAGAACATAAAGATGTGAAAATTTTTACTGAATCTCAAGACGAGGAGAGCCAAGACGAGAGAATATTGCATGATATGGTACAGTCGCCTATAATATCGGATGTACTCTCACTGTATCAGAAAAAGGAAGATGATAATGACTGTGTAGTAGTAAATTTAACAGACGATGACTCTGTGGATATGGACGTAAGTGTTCCTGTCATTACAATTGATGATGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMECAQIKVFEGDGLPDKICSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSDTPPPTNRQSSDSAFSGHTDNSSQAKPSSSTDGKTPTNRNRKRSHGSIDNVSVTSRTHDRPSSTKRVEELRKSQKRARHQSENTDSDFDYSASQFSAETDSDEPLMKPEYKCDKCDKTFKSIKSRSAHMKIHSGEKPTYLAANAVVNIPRKHLEDASDSDNKLNCEKCGKTFKLKIMLKRHLESCDTSPHQYQLNKFEKSPQKELLVSLEPIDMLQVRRLDCEICTTKFKTLDNLRKHMRVVHAAVLKRDHADSDVEQENGITSVPCLYCHKQFLDYYAHGEHFSKCPQKKEMDSYKCPICHKVLTKTCAYIIHLRSMHFGQPLLNQSMEETSYPEVFECRMCSKKLASQELLITHLATHMSNIEENAAMDNDSRPSTPDGAISVHSSYSNTYAPKGPLNCKLCDKSFKYKKALETHEMKHTTGAIEIKVEPPDKTASTSLLSESRGQLPHADESESESSHDEGEDNTCDICEKQFSYKRLLLQHKRTKHNMSSGTKRAKITLKDCLVRCLICDLEMKVSAINEHNQKHISVNIKPRNMYTCGVPDCGEKFKSCSALANHIKLVHRLKQQPKQSQKLPRLEGGTDLADFCEVVVTKTEPLDTLQSHNGFGEVPINNGGEQASSPLVNMNGFTCTICGKVMATLVSLKRHVNWHTNVGNNIEKSIECFVCKEKFRFQCHYKLHMREHYRDTNLDPKLLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQFRKVYLSHMAIHYKRGESVQNTIVGDVTPNNIDRTIFDGTHTCHLCNKVCDSETSLKHHIIWHKSKTSLFGARHECYICQLVFTNKRRLELHIRSHYEDDNGPYKCQICGKGYIDEEYFKRHLKGHNFDHQSHKKRIEKLRKDKVKCPICARYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPMYYSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKSHRVHIKAHLCEKHLDNPLQCPHCEETFIKGYGLHHHLRDVHGIEETWIAERQEQTLDGPLQEFQCSICFKILASKGNFERHIDYHNSLRCNYCFEYFSTHRFLEGHLSFSCEKKKIIGDCEIYPKKVKCHVCYKAFHLQVKLDCHLRTQHNIKVNKEASLGRKDIVCDYCFRAFENEDALTTHKLYHRTIGYYGCIYCKRKFNTLTVYRKHKNYHYAQLNVDNPTKCEHCDETFVAFREMIYHMRDEHGDNKEWIVLPKESIEEKCPICNKIFYNLHKHLTYHEENRCKKCGEYFYSRVDYDNHLCAIESDDDGVEIVDGTVQPKYEECRFCFKPVTRKNSKRLHNQIHQVSGAISCRFCLLKFKTMEAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGLFIRHMKNEHKSLKKMHYRAVVKAERCVVCGEDFPNLHNHYRAHLQNHCLSCNKYFTSMKLFTQHACDKEDSDPSKVFTCDEDLVALINSYVPKDEKDDEKYYGYNDDEEEEEQLEENKSQQVESEPIDEEEHKDVKIFTESQDEESQDERILHDMVQSPIISDVLSLYQKKEDDNDCVVVNLTDDDSVDMDVSVPVITIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -