Basic Information

Insect: Achroia grisella
Gene Symbol: -
Assembly: GCA_030625045.1
Location: JAULSB010000267.1:4277284-4280901[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.2e-06 0.00031 21.7 0.8 1 23 167 189 167 189 0.98

2 14 0.0075 0.56 11.4 2.2 1 23 195 218 195 218 0.93

3 14 0.01 0.73 11.1 1.4 1 23 224 246 224 246 0.97

4 14 0.00042 0.031 15.4 2.1 1 23 251 273 251 273 0.99

5 14 1.1e-06 7.8e-05 23.6 2.0 1 23 279 301 279 301 0.99

6 14 8e-07 5.9e-05 23.9 1.1 1 23 307 330 307 330 0.95

7 14 7.6e-06 0.00056 20.9 3.2 1 23 336 358 336 358 0.98

8 14 1.1e-05 0.00083 20.3 1.1 1 23 364 386 364 386 0.98

9 14 0.0011 0.08 14.1 2.0 1 23 392 414 392 414 0.99

10 14 1.4e-07 1e-05 26.3 0.6 1 23 420 442 420 442 0.98

11 14 2.6e-06 0.00019 22.3 3.4 1 23 448 470 448 470 0.98

12 14 0.076 5.6 8.3 3.0 1 23 476 495 476 495 0.95

13 14 3.5e-07 2.6e-05 25.1 1.6 1 23 502 524 502 524 0.98

14 14 6.7e-05 0.005 17.9 2.9 1 23 530 552 530 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.2e-06	0.00031	21.7	0.8	1	23	167	189	167	189	0.98
2	14	0.0075	0.56	11.4	2.2	1	23	195	218	195	218	0.93
3	14	0.01	0.73	11.1	1.4	1	23	224	246	224	246	0.97
4	14	0.00042	0.031	15.4	2.1	1	23	251	273	251	273	0.99
5	14	1.1e-06	7.8e-05	23.6	2.0	1	23	279	301	279	301	0.99
6	14	8e-07	5.9e-05	23.9	1.1	1	23	307	330	307	330	0.95
7	14	7.6e-06	0.00056	20.9	3.2	1	23	336	358	336	358	0.98
8	14	1.1e-05	0.00083	20.3	1.1	1	23	364	386	364	386	0.98
9	14	0.0011	0.08	14.1	2.0	1	23	392	414	392	414	0.99
10	14	1.4e-07	1e-05	26.3	0.6	1	23	420	442	420	442	0.98
11	14	2.6e-06	0.00019	22.3	3.4	1	23	448	470	448	470	0.98
12	14	0.076	5.6	8.3	3.0	1	23	476	495	476	495	0.95
13	14	3.5e-07	2.6e-05	25.1	1.6	1	23	502	524	502	524	0.98
14	14	6.7e-05	0.005	17.9	2.9	1	23	530	552	530	552	0.98

Sequence Information

Coding Sequence: ATGTCAGATAAGTGGAATATAGTAGGCTTGTGTCGGTGCTGCCACGCAGAAGGCAATTTCAAGAGTCTTGCTGTATCTTATACATGCAGTGGCAGCAATGAAATATTCTCTGTTATGCTTCGTGATACTTTCAACTTAATTATAGCTCCAATACCTGGTGAAAGGGGGGCATCCTCATACAGTATATGTGGAGCATGTGAACCCCGTCTGCGAGATGCTGCACTCTTCAAACAACAGGTGGTTACATGTGAACAGAAGTTTACCCAGTATTACAACAACCATGATTTTAAAGATGTCAAGAATGAGTCTGGCCACAGTGATGATCTCCACTCAAAATAtgATACATTTATGGAAGCTGACGATGGAGATGACGAACCCCTGTCGAAGCTTCGAACTAAGCTCGAGGTACCTTTACAATTAGACCCTGATGCCGATTGGGTAGCTCCTCCGCAATTTACCTTAAATCAAGATCGCAGAACACATAGAACAGATAAGAAATTCTCATGCAATGTATGTGAGAAAAAATTCTCATACCAGGGGTCTCTAGAAGTGCATAGAAAAATACATACGGGCGAGAAAACTTACAACTGTTATTTAtgcaatagtaaatataaacagAGCAAGACATTGACCAAACATATAGAAGATACCCACAGCGTTGGTAATAGGTACCCTTGCACTTTATGCACTCAGATATTTGATAAAACTAGAACTTTTAAAAAACATGTATCAATACATTTTGAGGagaaatacaaatgtaattacTGTAGTAAAGAGTTCCAGTGGAAGAAAGGATTGAAAgaacatataaaaacacatacGGGCGAAAAGAAATATGTATGTGATATTTGTAATAAGTCATTTGTACATAGTCAGACATTAAAATCGCACTTGTTGACGCATACCGGTGAAAGACCTTATGTTTGCGATGTTTGTGGTCGACGGTTTCCGCAACGAACACATTTgaaaagacatatatttataattcacacTGGAGTCAAACCTTACTCTTGTAAAGTTTGTAACAAACATTTCTCAAGCAAGAGCTATCTGGCGATACATGAACGTCAGCATACTGGTGAAAAACCATATTCATGTGAAGTGTGTAAAAAGAATTTCACCGCATACACAACATTAAAAGTGCATATGAGAGTTCATACGGGCTTAAAACCTTACACATGTAGCTTTTGCAGTCGACAGTTTGCGCAAATGGCCAGTTTCAAGCTACACGAACGAACGCATACTGGTGAAAAACCATTTTCGtgtaatgtttgtaaaaaacCATTCTCAGACAATGgttatttgaaaatacatatgCGAGTACACACTGGTGAGAAACCGTACAGTTGTGACGTATGTAAACGGTGTTTTAGGGAGACAGGACAATTAAAACGGCATATGCGTGTGCACACTGGCATAAAACCTTACAcatgtaaaatatgtaacaaacaaATTGGTAATTTATCTAAGCACATGCGGGTACACTCCACTGAGAGGCcttattataattgtgaaataTGTAATAAGCATTTTTCTGTCAACGGTAATTTAAAGTTGCATATGCGTATTCATACGGGTGAAAAACCGTATGCATGTGATGTTTGCAACAGTCAATTTACTCAGAGTAGTGGTTTAAAACGGCACAGATGCACACATACAGAAAAGAACGATGTTTAG
Protein Sequence: MSDKWNIVGLCRCCHAEGNFKSLAVSYTCSGSNEIFSVMLRDTFNLIIAPIPGERGASSYSICGACEPRLRDAALFKQQVVTCEQKFTQYYNNHDFKDVKNESGHSDDLHSKYDTFMEADDGDDEPLSKLRTKLEVPLQLDPDADWVAPPQFTLNQDRRTHRTDKKFSCNVCEKKFSYQGSLEVHRKIHTGEKTYNCYLCNSKYKQSKTLTKHIEDTHSVGNRYPCTLCTQIFDKTRTFKKHVSIHFEEKYKCNYCSKEFQWKKGLKEHIKTHTGEKKYVCDICNKSFVHSQTLKSHLLTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHTGVKPYSCKVCNKHFSSKSYLAIHERQHTGEKPYSCEVCKKNFTAYTTLKVHMRVHTGLKPYTCSFCSRQFAQMASFKLHERTHTGEKPFSCNVCKKPFSDNGYLKIHMRVHTGEKPYSCDVCKRCFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSTERPYYNCEICNKHFSVNGNLKLHMRIHTGEKPYACDVCNSQFTQSSGLKRHRCTHTEKNDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00736798;
90% Identity: -
80% Identity: -