Basic Information

Insect: Achroia grisella
Gene Symbol: -
Assembly: GCA_030625045.1
Location: JAULSB010000077.1:2242910-2245633[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00014 0.011 16.9 0.1 2 23 181 202 180 202 0.95

2 16 0.087 6.4 8.1 1.3 6 23 213 230 208 230 0.95

3 16 0.00012 0.0088 17.1 2.5 1 23 236 258 236 258 0.97

4 16 0.0001 0.0076 17.3 2.1 1 23 264 287 264 287 0.96

5 16 0.00018 0.013 16.6 0.6 1 23 293 316 293 316 0.97

6 16 0.00053 0.039 15.1 4.1 1 23 322 344 322 344 0.97

7 16 0.00037 0.027 15.6 1.1 1 23 350 372 350 372 0.98

8 16 0.0011 0.084 14.0 0.5 1 23 378 400 378 400 0.96

9 16 0.00058 0.043 14.9 6.8 1 23 406 428 406 428 0.96

10 16 4.6e-07 3.4e-05 24.7 2.0 1 23 434 456 434 456 0.98

11 16 2.5e-08 1.8e-06 28.7 0.8 1 23 462 484 462 484 0.99

12 16 3.5e-05 0.0026 18.8 0.9 3 23 492 512 490 512 0.97

13 16 1.8e-05 0.0013 19.7 3.6 1 23 518 540 518 540 0.98

14 16 0.016 1.2 10.4 5.2 1 23 546 568 546 568 0.98

15 16 1.9e-05 0.0014 19.6 2.0 1 23 574 596 574 596 0.98

16 16 3.2e-06 0.00024 22.0 1.5 1 23 602 625 602 625 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00014	0.011	16.9	0.1	2	23	181	202	180	202	0.95
2	16	0.087	6.4	8.1	1.3	6	23	213	230	208	230	0.95
3	16	0.00012	0.0088	17.1	2.5	1	23	236	258	236	258	0.97
4	16	0.0001	0.0076	17.3	2.1	1	23	264	287	264	287	0.96
5	16	0.00018	0.013	16.6	0.6	1	23	293	316	293	316	0.97
6	16	0.00053	0.039	15.1	4.1	1	23	322	344	322	344	0.97
7	16	0.00037	0.027	15.6	1.1	1	23	350	372	350	372	0.98
8	16	0.0011	0.084	14.0	0.5	1	23	378	400	378	400	0.96
9	16	0.00058	0.043	14.9	6.8	1	23	406	428	406	428	0.96
10	16	4.6e-07	3.4e-05	24.7	2.0	1	23	434	456	434	456	0.98
11	16	2.5e-08	1.8e-06	28.7	0.8	1	23	462	484	462	484	0.99
12	16	3.5e-05	0.0026	18.8	0.9	3	23	492	512	490	512	0.97
13	16	1.8e-05	0.0013	19.7	3.6	1	23	518	540	518	540	0.98
14	16	0.016	1.2	10.4	5.2	1	23	546	568	546	568	0.98
15	16	1.9e-05	0.0014	19.6	2.0	1	23	574	596	574	596	0.98
16	16	3.2e-06	0.00024	22.0	1.5	1	23	602	625	602	625	0.97

Sequence Information

Coding Sequence: ATGAATCCAGTTAATATAAAGGTTGAAGAACACACCACCATTagtaatttagttgtaactatCAAACAGGAAGTTGTAGATGATGAATTCAATGATCCTTTGTCAGTACAAAGTAGCgcaaataatgaatataattcaAATGGAGTTCTTGAAATAAAGAATGAAATACCAACAAAGCATGATATGGTAGGAAATGCTTCGAGTGTTGAAATTACTATTGAAATAGAACcagatatacatacaaaaattaagACTGAAAAGCCAGAAGTAGATGACACAAATGAAAttgatatagaaaataattttgctacaaaatataatgaaaataccaTATTTATTAAAGAGGAAGTGCATGAAGATGCCTGGGAGGAACAAAGTGATGTTAAAGTAGATGTACAGAGGATAAAATCTGAACAGGATGAGTCTGACGATAAGTCAAAGATATCATCAGATAGTAATGACTTAATAGACAAATCTCAAAATGATGGTTTAACTTCTGATGGAAAGCCGACTACAGTTGAAACTTCAAGCAATGAATTACGATGTGATATATGTAATGAGGTATTCTCGTCTGTTGACGACTTGCGACTCCACACACAGGACCATACGGACCCTGAAACACACACTTGTATACCGTGCAGACGAAGCTTTTCTGGTGTTAAATCACTGCGTCGCCATATGGTGATACATACTAGCGAAAAACCGTATTGCTGCGAAATATGTCAGATGGCATTTACAGATAGTTCTGGTTTCAGCCGTCATAAGCGGCTACATTTCGGGGAGAAACGACATGTATGTGAAATTTGCGACATGAGGTTCCGAGACCACTCCAGTATGGACCGTCATATTATGCGAGTTCATAAAAATGAGAAAAGATACAACTGCGACTTGTGTCAGCAAAGTTTTCCCACAAATGTACAGGTCCAGTATCACATGAAGAGAGTTCATACAGATAAAAAAGAGTTTTGTTGTGACCAATGTCACCAGTCCTTTTCTGCAGCTAGATCATTGAAACGTCACTTATTAATACACAGTGGGGAGAAGCCATATAAATGTGACATTTGCCTGAAGGATTTTAGAGACAACTCGGTTATGCTTCGTCACAAACGCTTGCACACTGGTGAAAAACCTTTTCTTTGTAAAGTGTGTGATAATTATTTCATAGATCAAACACGATTGAGTATACATATGCGAGTTCATACCGGCGAGAGGCCGCATTGCTGCGAATACTGTGATCAGTCGTTCAGAGATCATACGCAACTGTCGATTCACACACGTATCCATACTGGTGAAAGACCATACAGTTGTGACGTGTGCCAGAAGAGCTTCAAAGACAAAAGATCGTACAAAGTTCATATGCGAATCCACACTGGTGAGAGGCCATACGAGTGCACAGACTGCGATAAATCTTTCAGAGACAATACTCTGCTGAGACAACACATTCGCATACACGCTCGCAAGCCGCAGTCTAATTGTACAGATTGTGAGAAGGGATTCAATGATGACACACAATTACAGAATCATATGCAGAAACACACGGGTGACAAACCATACCACTGTTCTATGTGCGTGAAGAGTTTCAGAGATATGTCACAGTTACGAATTCATACACGAACACATACGGGAGAAAGACCTTTCACTTGCACAGTGTGTAAAAGTGCTTTTAAATCACGTTCAGACTTGAATTGCCATATGCATATACATTCCGATGTGAAACCATTTAGTTGCGAAGTGTGCGGAAAGAGCTTTAGGTTCCAGAAACGTGTGAGGTATCATATGAGGATCCATACAGACGAGAGGCCTTATCCCTGCAAACTGTGTCCGCAGCGGTTTAGAGTGAGTGGTCACTTGAAGAAGCATATGAACTCAATCCATGCTAATGAAAGTACAGAAATAATAGTACCTGATTGA
Protein Sequence: MNPVNIKVEEHTTISNLVVTIKQEVVDDEFNDPLSVQSSANNEYNSNGVLEIKNEIPTKHDMVGNASSVEITIEIEPDIHTKIKTEKPEVDDTNEIDIENNFATKYNENTIFIKEEVHEDAWEEQSDVKVDVQRIKSEQDESDDKSKISSDSNDLIDKSQNDGLTSDGKPTTVETSSNELRCDICNEVFSSVDDLRLHTQDHTDPETHTCIPCRRSFSGVKSLRRHMVIHTSEKPYCCEICQMAFTDSSGFSRHKRLHFGEKRHVCEICDMRFRDHSSMDRHIMRVHKNEKRYNCDLCQQSFPTNVQVQYHMKRVHTDKKEFCCDQCHQSFSAARSLKRHLLIHSGEKPYKCDICLKDFRDNSVMLRHKRLHTGEKPFLCKVCDNYFIDQTRLSIHMRVHTGERPHCCEYCDQSFRDHTQLSIHTRIHTGERPYSCDVCQKSFKDKRSYKVHMRIHTGERPYECTDCDKSFRDNTLLRQHIRIHARKPQSNCTDCEKGFNDDTQLQNHMQKHTGDKPYHCSMCVKSFRDMSQLRIHTRTHTGERPFTCTVCKSAFKSRSDLNCHMHIHSDVKPFSCEVCGKSFRFQKRVRYHMRIHTDERPYPCKLCPQRFRVSGHLKKHMNSIHANESTEIIVPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -