Agri000630.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000017.1:975956-984420[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 3 2.2e+02 3.3 5.5 1 23 53 76 53 77 0.96 2 35 0.021 1.5 10.0 0.2 2 23 103 125 102 125 0.95 3 35 0.45 33 5.8 2.9 2 23 148 169 147 169 0.97 4 35 0.0038 0.28 12.4 0.3 1 23 173 195 173 195 0.95 5 35 0.0033 0.24 12.6 1.4 1 23 200 223 200 223 0.96 6 35 0.49 36 5.7 0.9 1 23 230 253 230 253 0.88 7 35 9e-06 0.00066 20.6 1.5 1 23 288 310 288 310 0.98 8 35 5.6e-06 0.00041 21.3 0.9 1 23 316 338 316 338 0.99 9 35 0.98 72 4.8 0.3 3 23 404 425 402 425 0.90 10 35 0.23 17 6.7 0.3 2 23 499 520 498 520 0.96 11 35 0.0083 0.61 11.3 0.2 1 23 524 547 524 547 0.92 12 35 0.0031 0.23 12.6 2.8 1 23 552 575 552 575 0.96 13 35 0.031 2.2 9.5 0.7 2 23 583 605 582 605 0.95 14 35 0.0026 0.19 12.9 3.7 2 23 613 635 612 635 0.95 15 35 0.00066 0.048 14.8 6.2 1 23 641 663 641 663 0.98 16 35 2.9e-06 0.00021 22.2 3.1 1 23 669 691 669 691 0.98 17 35 0.57 42 5.5 1.0 3 23 760 781 758 781 0.92 18 35 0.022 1.6 10.0 0.2 2 23 807 829 806 829 0.96 19 35 0.095 7 8.0 0.6 2 23 852 873 851 873 0.97 20 35 3.4e-05 0.0025 18.8 0.3 1 23 877 899 877 899 0.98 21 35 0.22 16 6.8 1.6 1 23 904 927 904 927 0.97 22 35 0.21 15 6.9 0.5 3 23 936 957 935 957 0.94 23 35 0.00013 0.0097 17.0 1.9 2 23 965 987 964 987 0.96 24 35 0.00013 0.0095 17.0 4.2 1 23 993 1015 993 1015 0.97 25 35 7.8e-06 0.00057 20.8 2.8 1 23 1021 1043 1021 1043 0.99 26 35 0.00023 0.017 16.2 2.1 1 23 1049 1072 1049 1072 0.96 27 35 0.0088 0.65 11.2 1.1 1 21 1130 1150 1130 1153 0.90 28 35 0.09 6.6 8.0 0.1 2 23 1179 1201 1178 1201 0.94 29 35 5.5e-05 0.004 18.2 0.7 1 23 1249 1271 1249 1271 0.98 30 35 7.6e-06 0.00056 20.9 1.7 1 23 1276 1299 1276 1299 0.98 31 35 0.73 53 5.2 1.2 3 23 1308 1329 1307 1329 0.93 32 35 2.5e-05 0.0018 19.2 2.3 2 23 1337 1359 1336 1359 0.96 33 35 0.00048 0.035 15.2 7.1 1 23 1365 1387 1365 1387 0.97 34 35 9.5e-06 0.0007 20.6 2.3 1 23 1393 1415 1393 1415 0.99 35 35 0.018 1.3 10.2 2.2 1 20 1421 1440 1421 1444 0.94
Sequence Information
- Coding Sequence
- ATGCTAGTAAAAGACAAGGAAACCCATAAAGAATTAAAAGAAACTAAAGATGATATAGCTACAATATCATCAGAACTTAGAAaacactatattaatattaaagaaatcctTAAACATTCTAACGCAACCCCTATAAGATATCGCATCGGTGTAGGATATAGTTGTTGTTACTGCAATGATCAATATCAAGATCCAGCACATTTAAAAGAACATACCTCTAAAATACATCATGACGTATCCAAAGCATGTTTCATGCAAAGAAACAGACTTTTCGAATATTTCGTCAGATTAGACATTACTAAACTAATTTGTAAGATTTGTGGCAGCAGTATTGATACTTTAGAAAATCTAATGATGCATCTAAAGTCTAAACatcaagtaaatatatatacagatattaaaAACCGTATACTGCCGTTCAAATTTGAGTCAGAGACTCTTCAATGCTGTATgtgtttaaatgtatttaataaatttaaaacattgctGGAACATATGAATATGCATTACAAAAATTTTCTGTGTCGTATTTGTGACGCTGGCTTTGTAAATAAGAGGCAATTGTCCATACATCGAATATCACATAAAATAGGCACGTTTCGATGTGGATACTGTGACAAAGTTTTTGATAATCTAACTAAGAGACGAAGCCACGAAAATAGAgtgcatatttataaaaatttactgcACAAGTGTGGTTATTGTAACCTAAAATTTACAGTGGGTAAACAGAAAAATGAACATATAGAAGCCGTGCACGGTGTCAAGACGTCGTATAATTGTCAAGCTTGCGAGAGAACATTCAATTGCACTAAGCGATTGTATTCACATATAAAAAGGGATCATCTAATGGAGAGACTTTTTAAATGCACAGAATGCACTAAAGAATTCTTCTCAGCGGGTCAACTGAAGAATCATATGTTACGTCACAACGGGAAGAAAGAATACCAATGTGATATTTGTCTGAAGTCGTATGGAAGGAAGTACACATTGACAGAGCATATGCGGATACATGCTAATGATCGTAGATTCAAATGTATTGGGAATAGCATACTGACAGTGGGAGCTGATCAAAACCACACTGTAGATCTAAAACACGGACGtgatgtattaattaaaaatttacgcAAGAACGAAGAAAATCTTAAGAATATCCTGCTAAACTCTAACGCGAATCCAATAAGTGGTAAAACCAACGACGGTTACGGTTGTGCTTTCTGTACAAAGATGTTTTTAAATCCTGCAACTCTTAAAACACATTTTCTTGAAGAACATAGGAACgacaaacatattttacaaatgaCGCGCTTAGCGCAGTACATCtttcaaaaatatgttaaaatcgATATAACTCTTCTAGCTTGTGCTCTATGTGAAAAGAAGATGGAGACACTGGATGATATGATGATGCATTTTAATGCCGAACACGATATAAAAATGCATACcgatattcataatttaattttgccATTCAAGATCGAATCCAATGAGCTTCGCTGCGGCGTTTGCTTAACGAAATCACCAAATCTTAGCCGGTTAAAGATACATATGTCTTCGCATTTTGGCAATTATCTCTGCCAGAAATGTGGCATGGGATTTGTCACTGTTCGTTCCTTAAAAAGCCATGTAGTTAGAGTGCACGAAAACAGATGTTATAAGTGTGATAAATGTGACAAGACTTTTAGTAATACATTGAAAAGATATGACCATCTGAGAAGGGTGCACCGCAGCGTCGAAAATATGATTAAGTGTCAGTATTGTTCCCAAACTTttgtagattattataatagagaTAGTCATTTAATAAAAGAACATGGGAAGGCTGCTGTTGTTTTGAAATGTCAGGCATGCGAGCGCACATTTCACAACCAGAAGCATCTAAATGCACATATAAAGAATGTTCATCTTATGGAGAGAAATCATAAATGTCCAGAATGCGATAAGAGATTTTTCCTAAAGAATTGTTTACAGAATCATATGCTGAAGCATACAGGATTGGTGCAGTTTGAATGTGATATATGCCATAAGGCGTACAAAAGGAAGTTTACCCTGCGGGAACATATGAGGATACACGCAAATGATAGGAGATTTGTTTGTATTGCAACTGGAACTAGCATATTGACAAATGGAGCCGATCGAAATGTCAGTGTAGATCCCAAGGTTATCTCAAAACGTCGCATCTACTCAGACTTCTATAAGAACAAACAAAATATCCTGAACGTTCTACTGAATTCCAACGCCAACCCAATAAGATCGAAAGATAGCTATGGATACGGCTGCGGGTTCTGTCTAAAGAAGTTTCCAGAACCCAAAACTTTGAAAATGCACTATCATGAAGAGCACAACGATGATAAACTGATTAAGCATACATCACATACATTCTTTGAATCTGTAGTTAAACTGGATATAACATTCCTTAAGTGTACTTTATGTGATACAGATTTAAAGAAACTGGATGAACTAATAACGCATCTGAATGTTGAACATAAGATTACTATGTACACAGACGTAAACAGTACTATCGTTCCGTTTAAATTTGATTCGGATGAGCTCCGTTGTGCTTTATGCGAAATATCCTACTCTTCCTTCAAGCGAATGCAGGAGCACATGAACTCTCATTTTGGATATTACGTTTGCGAGGTTTGCGGAGCCGGATTTGTAACAAAACGTCTATTGAAGAAGCATGAGAAGAGGCATGAAAACGGTGAATACAAATGTGAGCAGTGTATCAAAATTTTCACATCTAAACTTAAAAGGCAAGAGCATTTGAAAAGAGCGCATCTTGGGTTAGACAAGAGGAATATATGTCAGTATTGTCCGGAGCGGTTTGTTGATTATTGGAAGAAGGTCCATCATATGGTGAAGGTGCATGGTCAGTCTCCCGTAGTTATAAAGTGCAAAGCATGTGATCGAACCTTTGATAATCAGAGATCTCTAAGCCGCCATACAAGAAAAGATCACCTTTTGGAGCGAAAGCACCCGTGCCAAGAATGTCATATGACGTTTTTTAGCAAAAGTGGCCTGCAAAAGCATATGGCGAAACATACCGGTTTGAGGCAGTTTAAATGTGAAGTATGCCATAAGGCGTATGGAAGGAAGAATACTCTGAGACAGCATATGCGGATTCATGCTAATGACAGGCGATTTGCTTGTACATATTGTGGTCAGGCGTTTGTTCAGAAATGTAGCTGGAAAAGTCATATGTTGTCGAAGCATGgTATTGCAAGCGGTACTAAGGTATCAAGGACTGAAGCCAACTGCGATCTCTCTCTCAGGCGTATTCCACAAGGAGGCAACGCTAGCcaatattttaagataaaacaAAACCTTAAAAACATTCTCATTAACTCCAATGCTAACCCTATAAGAAGCAAAGACGGCAACGGATACAGCTGCGGATTCTGTCCCAAGAAGTTTCCAGAAACCAAAAATCTGAAGACGCATTTTGACGAAGAACACAACAATAATAGACTGATCAAACATCTAACGCCAAAATTCTTCAGGACAGTTGTTAAATTGGACATAACTCTTCTAAATTGCTCACTATGTAAAAAGGAATTAGACGACCTGAACGATTTAATGGCACATTTAAATCTCGAACATGATGTAAAGATTTATACTGACATAAAGAACCCAATACTACCATTTAGATTCGATTCGGAAGAACTTTGCTGCGCTATTTGCAAAATTACTCACACCTCGTTCAAGCGAATGCAGGAACATATGAGCAGGCATTTCCAGAATTACATGTGCGAAGTGTGTGGAACAGGTTTTGTTATAGAAAGACTATTGAAACATCATATGAGGACGCACGAGAATGGGGAATATAAATGTGCACAGTGTGACAAAACGTTCACGAACAACGTTTATATGCAGCGGCATTTGAAGATAACGCACCTCGGTTACGACAAGAGGAACATATGTCAATATTGTCCGGAAAGATTTGTCGATTATTGTAAGAAGTTAAGTCATATGGTCAAAGTGCACGGCCAACAGCCTGTGGTTTTAAAGTGTAAGGGATGCGATCGCACATTTGAAAACCAGAGATCATTATCTCGACACACAAAGAAGGATCATCTGTTGGAGCGGAAACATGAATGTCAAGAGTGTCATATGAGATTTTTTACTAATAGTAGCTTAAAAAAGCATATGACGAAGCATTCCGGGTTAAGGCAGTTTAAGTGTGAAGTATGCCATAAAGCGTATGGTAGGAAGAATACTTTGAGAGAACATATGCGGATACATAATAATGACAGACGATTTGCATGTACGTTCTGCGGTCAGGCGTTTGTTCAGAAATGCAGCTGGAAAAGTCATATGTGGTCGAAGCACGAACAAAAAGTTTAA
- Protein Sequence
- MLVKDKETHKELKETKDDIATISSELRKHYINIKEILKHSNATPIRYRIGVGYSCCYCNDQYQDPAHLKEHTSKIHHDVSKACFMQRNRLFEYFVRLDITKLICKICGSSIDTLENLMMHLKSKHQVNIYTDIKNRILPFKFESETLQCCMCLNVFNKFKTLLEHMNMHYKNFLCRICDAGFVNKRQLSIHRISHKIGTFRCGYCDKVFDNLTKRRSHENRVHIYKNLLHKCGYCNLKFTVGKQKNEHIEAVHGVKTSYNCQACERTFNCTKRLYSHIKRDHLMERLFKCTECTKEFFSAGQLKNHMLRHNGKKEYQCDICLKSYGRKYTLTEHMRIHANDRRFKCIGNSILTVGADQNHTVDLKHGRDVLIKNLRKNEENLKNILLNSNANPISGKTNDGYGCAFCTKMFLNPATLKTHFLEEHRNDKHILQMTRLAQYIFQKYVKIDITLLACALCEKKMETLDDMMMHFNAEHDIKMHTDIHNLILPFKIESNELRCGVCLTKSPNLSRLKIHMSSHFGNYLCQKCGMGFVTVRSLKSHVVRVHENRCYKCDKCDKTFSNTLKRYDHLRRVHRSVENMIKCQYCSQTFVDYYNRDSHLIKEHGKAAVVLKCQACERTFHNQKHLNAHIKNVHLMERNHKCPECDKRFFLKNCLQNHMLKHTGLVQFECDICHKAYKRKFTLREHMRIHANDRRFVCIATGTSILTNGADRNVSVDPKVISKRRIYSDFYKNKQNILNVLLNSNANPIRSKDSYGYGCGFCLKKFPEPKTLKMHYHEEHNDDKLIKHTSHTFFESVVKLDITFLKCTLCDTDLKKLDELITHLNVEHKITMYTDVNSTIVPFKFDSDELRCALCEISYSSFKRMQEHMNSHFGYYVCEVCGAGFVTKRLLKKHEKRHENGEYKCEQCIKIFTSKLKRQEHLKRAHLGLDKRNICQYCPERFVDYWKKVHHMVKVHGQSPVVIKCKACDRTFDNQRSLSRHTRKDHLLERKHPCQECHMTFFSKSGLQKHMAKHTGLRQFKCEVCHKAYGRKNTLRQHMRIHANDRRFACTYCGQAFVQKCSWKSHMLSKHGIASGTKVSRTEANCDLSLRRIPQGGNASQYFKIKQNLKNILINSNANPIRSKDGNGYSCGFCPKKFPETKNLKTHFDEEHNNNRLIKHLTPKFFRTVVKLDITLLNCSLCKKELDDLNDLMAHLNLEHDVKIYTDIKNPILPFRFDSEELCCAICKITHTSFKRMQEHMSRHFQNYMCEVCGTGFVIERLLKHHMRTHENGEYKCAQCDKTFTNNVYMQRHLKITHLGYDKRNICQYCPERFVDYCKKLSHMVKVHGQQPVVLKCKGCDRTFENQRSLSRHTKKDHLLERKHECQECHMRFFTNSSLKKHMTKHSGLRQFKCEVCHKAYGRKNTLREHMRIHNNDRRFACTFCGQAFVQKCSWKSHMWSKHEQKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -