Agri016812.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- clz9_1
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000303.1:5230672-5231778[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.1e-11 8.6e-08 32.4 0.0 5 39 1 35 1 37 0.96 2 3 1.5 1.6e+03 -0.5 0.0 24 34 155 165 153 171 0.86 3 3 0.9 9.6e+02 0.3 0.0 21 28 270 277 263 277 0.84
Sequence Information
- Coding Sequence
- ATGGACGAAGCCTTAAAAATGTACCGGAAGAACGAACTTGGGTTTAACGAAGCgtgtagaaaatataaaatacctaaaccTACATTTAGACGTCACTTGAAAGGATTAAATGTAAACACTAAATTTGGTAGACCTAAATATTTAACAGATGAGGCAGAAAATGAATTCGTTCAGTATTTGCTTGCAATGGAGGCAAATTTCTTTTCTTATAGCGTTACTGCGTTGAGGCAACTAGCATACCAGTTTGCCGAAAAACACAAATTACCACATCCTGGTTTTAACAAAGCACAGAAAATGGCCGGTAAGCActggtattataattttaagaaagAATATCCATTACTGTTCTCGCGTACCCTGATGGCGATATCACCgcgaaataaaaaattgtgcaTGGGTCGTGTTAGGGATTTctacaataaatatgaaaaaattctCAATGAACATAATTTAGGTGCTGAtcgtatttacaatattgataGCACAACTTTATCTCACGCAGACAATGAACTGATTAGTAAAAATAGATCTTTAAGTGTTACATGTATATGTGCCATGAACCCGGTAGGAGAATTTATACCACCTATGCTAATATACGAAAGAAATACTGTAGACGACTCTCTCAAAAAAGAAGCACCTGCGAATACTGCATTTGGGTGTTCAAAAAATGGATGCATAACGCCAGAGTTGTTTTTACAGTGGTTAGAACATTTCATTAAGTATACGAATTTAGAggaaagtaaaaatatacaaatgttgttattattagaTGGTCATAATGAATATTCCAAAAGCTTAGCTGCGATGCAGCTGGCGCGTGAGTATGGTATTTTTCTGCTATCTTTTCCTCTTCACACGACACAATGCCTTCAACCTTTAAGAAGAACGTTTTTTAAGTCATTGGAAGATACTTACAAAGAAGCCGCAAATTTTTGGCTTAGCTCAAATCATGGTAAAGATATTGAGCAGACCAATTATGCGGAAATCCTTGGTTATGCATTCCCTAGATGCGTTCATATGGAGTTAGGATTAAAAAACTTTGAAATAACGGGTTTGTGGCCGTTCAATCCAAATCTAGTAACagaagaatattttataaaatcttaa
- Protein Sequence
- MDEALKMYRKNELGFNEACRKYKIPKPTFRRHLKGLNVNTKFGRPKYLTDEAENEFVQYLLAMEANFFSYSVTALRQLAYQFAEKHKLPHPGFNKAQKMAGKHWYYNFKKEYPLLFSRTLMAISPRNKKLCMGRVRDFYNKYEKILNEHNLGADRIYNIDSTTLSHADNELISKNRSLSVTCICAMNPVGEFIPPMLIYERNTVDDSLKKEAPANTAFGCSKNGCITPELFLQWLEHFIKYTNLEESKNIQMLLLLDGHNEYSKSLAAMQLAREYGIFLLSFPLHTTQCLQPLRRTFFKSLEDTYKEAANFWLSSNHGKDIEQTNYAEILGYAFPRCVHMELGLKNFEITGLWPFNPNLVTEEYFIKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -