Afla003151.2
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- -
- Assembly
- GCA_947623365.1
- Location
- OX392496.1:2211527-2236103[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.93 60 4.7 2.1 1 23 718 741 718 741 0.95 2 12 0.0015 0.094 13.6 1.4 1 23 749 771 749 771 0.96 3 12 0.0062 0.4 11.6 1.5 1 23 775 797 775 797 0.98 4 12 0.04 2.6 9.0 4.7 1 23 805 828 805 828 0.93 5 12 0.0087 0.56 11.1 1.0 2 21 833 852 833 853 0.92 6 12 0.00049 0.032 15.0 0.9 2 23 869 890 868 890 0.94 7 12 0.0053 0.34 11.8 0.2 1 23 895 917 895 917 0.97 8 12 0.00013 0.0081 16.9 4.9 1 21 926 946 926 951 0.94 9 12 0.00074 0.048 14.5 1.7 1 23 959 982 959 982 0.92 10 12 0.013 0.87 10.5 0.3 1 23 988 1011 988 1011 0.95 11 12 0.032 2.1 9.3 0.4 3 19 1024 1040 1022 1041 0.89 12 12 0.011 0.72 10.8 1.2 1 23 1054 1077 1054 1077 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAAATCAACATAAATATAGAAGGATATAATGTGAATGGGATATGTGTCGGTTGTTTGAATTATAATCGTAAAATGTTCTACGAGAACGATGTGAAGGAATGTTTTCAATTATTGGGAGATATTGATGTACCAGATGGACTAGTTATCCAGGTGTGTTGGGAGTGCCTCGCCGCAGTCAGAACTGTTAAACATTTCCAGCAACAAATACTGAACTCCTATGATATACTGATTAGTTATTCTAAAAAGCACACATTTCTCAACTCTCCCAAGGATCTATCAAAGTATGCAACAACAAAGCTCACATTAATCACATGTGAAGTAGACACAGTACAAACATTGAAGTATGAAGAAACTGACGATTCAAATGTGGTGGTGAAGGAAGAAGATGAGAAATACTTGCAGTTTGATGAAGAACGTCAAGAGAATGTAGGAGAGTTCGAAGGAGAAAGTCATCCCCTTCTGAAGGAGGATTATCCAGAAACGGACCCTTTTTCGGCTTCTGGCTCATCTTATGAATATCAACCATCGGAAGAAGATGAAGTAAAACAATGCTATTTAGATGTCTCTTTTTGCGACAATTCATCTGACATTACGCTAAGTCCCACCAATGATGGGGCCAATGAAACACAGCCGAGTTATATACTGCCAACTATCACACAATGCGTATCTCGCCAGCTTCAACCGGGCCACGTAACGTCAACTATCACAGATGGACCTTGCCAACCTGAAGGGGTTTTCACGCTTTCAACCTTCATAGAAGATGAACGCCAACGGCTAACAACCTTAATTCCGCAAACCGACACAGAGCACGAGTCTCAACAATCGCAAATAGACATGTCACAGAAAACGACCCAACAAGAAACTTGTCAATTGAAATTAGAGTCTTGTCAGCCACAAGACGTCATGCCTTCAACTACAGAAGGACAATCTGATGCTACGGACTGTAGTAAGTCGGTCGGAAAAGGTCGTAAGAGAGACTTCTGTTTCTATTGTGAAAACCACGTGTTAAGCTTTTCTAGACATATTGTGAGACACCACTCCCTTGAAGTTGATGTCAAAAAGATCATAGCTTTACCAACAAAAAGCCGAACCAGAAGAAATTTGATAACCGATTTGAAAAAAAAAGGCAACTATATCTTAAATGTGGTAAAATGTGAAAGACCAATGAGAGTTGTAAAAGGTACAAAACAAACTGATTACTTGCCATGCCCGAACTGCTTAGGATTCTATGCACGTAAACAGTTTATGAAGCATAAGAAAACATGTGATCCAGAGCTTTCCAGCAAACATTCGCAAGCAAAGGCACAAAATCTTATGTGTCGCAACTCATCGCACACTCATTCGAAATCACTCGAAAACGTATTTTCCCGAATGCGCGCCGACGAAATTTCATATGTCGCGAAACAAGATCCAATAATTTGTGAATTTGGGGAATATTACTTGAAAATAAACAAGAAAAAACAGTTTGTACATGTCACTTCTAGAAAAATGAGAGAGTTGGCGAAACTATTAATTGAAATGGGAAATAGAAAATCTGAAATAACGACATTATTTGATGCACTCAAGCTACAAAACTACGACGTATTGGTAGCGGCTACTAAAGCTGTAGCTAATTACGATGAGAAATCTGATCGTTACTATTCACCGAGGTATGTGAGGAATATAAATGTCGACCCAAAAGACGAACCAGAGATCGCAGTCGAAGATTCCCAATTCTCTGAAGACTTAAACAATGATGTCACATCAGATATTCACTCGGATGTACTTCAGGATAACGAGGTGACCTCAGACGATGATATACAGCTGTCCAAGCTCAAGAAGAAGAAGGAGAAAAGAAGTAAAAAGGGAAGGAGTAAGAAGGACAAGAAGGGAGATAAGACCAGCCCCCACAAGCAGCACCTGTTCACAAGTATGACGCGTGTGGCAGCCACCGCCCTCCTCGCCATATTGGAGGGAAGTGAGCGACCCGCCACACGACGCCGCCAAAATCTCTATCATTCCTTGCAGTCCAAAAAAGAGCCGCAGAAGAACAGAAAACTGAAGAACTTACCTAGTGATATAGTAGAACTTTACACAATGAGTGAACAAGAGATGTGGGATGTGAGGACTCAGGATGTACAGAACAAAGACTTTGTCAAAATGAAGTATAAGTGCTGCGACTGTGTGATTGGGTTCAACAGTGATAAACTGATGAACTATCATTTGAAAGGGAAGCATAGCCAGAAATCTCAAGATTCCCACCAATGTGACGTCTGCAAAGCATACTTCATTACTAAAGACAATCTATCCATCCATCGGTCGCTACATCTATCGGCTTTCAAGTGCAAGGAGTGTGGTTTCCGCACCTCTCTCAAGAGGCTCATGTTGAAACACGCCAGGATACATACGAACGAGAGTAACGAGGAGTATAAGTGCAACACGTGTTTAAATACCTTCAGCACAAAATCAAAACTATCATACCACCGTGGGGTATGTCATCAGGAGAGACCCCAGTGTGATTGTTGCGGGAAAGTGTTCGCTAATAAGATGACCTTGAAATACCATCTCAAAATATTACCGCAGAACAAGGACAACAAACCTAAAGAAAAACTGTACATACCGTGCAAGGGATGCAACAAAGTATTTCATTCTAAGAAGAGTTACAGGGCTCATGTCGTAATCCACGAAGGCCAGTCCTACCCTTGTCCAATTTGCGGTAAACTCTTCCTTTGGAAGCGTAATTTAGCGAGACACACCCGCAACCACAGGGAGAGAGACGCCGGGGCGCTACACGAGTGTCGAGAGTGCGGCAAGAGCTTCTCCAGTCGAGACTGTTACAATAACCACATGCGGCTGAGCAAGAGACATGTTGCCGAGGAGGCTTATGCTCACGAATGCAACTACTGCGGTAAGAAGTTTCCTACTAAATGGTGTATGGTGGATCACATCGACTGGGATCACTTGAAACGGATCAAGTATCAGTGTCGCGTCTGCTTCAAGCCATTCAAAACAGCTAAGATAATGGTGGCCCATATGAACAATATACACGAGGGCAGGAAGCGGGAGCCGGAGGGGGAGCATCTCTGCGAAATATGCGGGAAATCATATAAGACGGTGAAGCGGTTGAAAGGGCACGTGTGGGCGATGCACACCACCCGCTCCACCTCCAAGGTGTTCAAGTGCAAGCTGTGCCCCGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATGAAGATGATGCACGACAATAGCAAGCGAGCCAAGCAACCCCGAGCACAACCAGCAGTGAAGAAACAAGAGCCCTACCCGGGAATCGAACTGGCTAACCGTATGCAGTACTTCCAGCAGAATATAACGAATAATCTAGTTCAAAATATCGTTCAGACGGTCCACGTGCAGTCTATAGGAGTTGCGCAGAATATTGTTTAA
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRKMFYENDVKECFQLLGDIDVPDGLVIQVCWECLAAVRTVKHFQQQILNSYDILISYSKKHTFLNSPKDLSKYATTKLTLITCEVDTVQTLKYEETDDSNVVVKEEDEKYLQFDEERQENVGEFEGESHPLLKEDYPETDPFSASGSSYEYQPSEEDEVKQCYLDVSFCDNSSDITLSPTNDGANETQPSYILPTITQCVSRQLQPGHVTSTITDGPCQPEGVFTLSTFIEDERQRLTTLIPQTDTEHESQQSQIDMSQKTTQQETCQLKLESCQPQDVMPSTTEGQSDATDCSKSVGKGRKRDFCFYCENHVLSFSRHIVRHHSLEVDVKKIIALPTKSRTRRNLITDLKKKGNYILNVVKCERPMRVVKGTKQTDYLPCPNCLGFYARKQFMKHKKTCDPELSSKHSQAKAQNLMCRNSSHTHSKSLENVFSRMRADEISYVAKQDPIICEFGEYYLKINKKKQFVHVTSRKMRELAKLLIEMGNRKSEITTLFDALKLQNYDVLVAATKAVANYDEKSDRYYSPRYVRNINVDPKDEPEIAVEDSQFSEDLNNDVTSDIHSDVLQDNEVTSDDDIQLSKLKKKKEKRSKKGRSKKDKKGDKTSPHKQHLFTSMTRVAATALLAILEGSERPATRRRQNLYHSLQSKKEPQKNRKLKNLPSDIVELYTMSEQEMWDVRTQDVQNKDFVKMKYKCCDCVIGFNSDKLMNYHLKGKHSQKSQDSHQCDVCKAYFITKDNLSIHRSLHLSAFKCKECGFRTSLKRLMLKHARIHTNESNEEYKCNTCLNTFSTKSKLSYHRGVCHQERPQCDCCGKVFANKMTLKYHLKILPQNKDNKPKEKLYIPCKGCNKVFHSKKSYRAHVVIHEGQSYPCPICGKLFLWKRNLARHTRNHRERDAGALHECRECGKSFSSRDCYNNHMRLSKRHVAEEAYAHECNYCGKKFPTKWCMVDHIDWDHLKRIKYQCRVCFKPFKTAKIMVAHMNNIHEGRKREPEGEHLCEICGKSYKTVKRLKGHVWAMHTTRSTSKVFKCKLCPATFTWQTSIYKHMKMMHDNSKRAKQPRAQPAVKKQEPYPGIELANRMQYFQQNITNNLVQNIVQTVHVQSIGVAQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252242;
- 90% Identity
- -
- 80% Identity
- -