Afla003447.1
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- -
- Assembly
- GCA_947623365.1
- Location
- OX392496.1:7156517-7168613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.068 4.3 8.3 0.7 1 23 462 484 462 484 0.97 2 12 0.32 21 6.2 5.0 1 23 491 513 491 513 0.97 3 12 4.1 2.7e+02 2.7 4.3 1 23 517 539 517 539 0.86 4 12 0.0018 0.11 13.3 4.2 1 23 544 567 544 567 0.97 5 12 0.55 36 5.4 0.3 3 19 576 592 574 597 0.89 6 12 1.6 1e+02 4.0 3.0 2 20 606 624 605 626 0.91 7 12 0.086 5.5 8.0 0.1 2 19 636 653 635 655 0.93 8 12 0.089 5.7 7.9 7.9 1 21 664 684 664 686 0.95 9 12 0.004 0.26 12.2 0.0 3 23 716 737 714 737 0.94 10 12 1.4e-06 8.7e-05 23.1 1.2 1 23 743 765 743 765 0.99 11 12 1.6e-06 0.0001 22.9 0.7 1 23 771 793 771 793 0.94 12 12 1.7e-05 0.0011 19.7 1.0 1 23 799 822 799 822 0.97
Sequence Information
- Coding Sequence
- ATGGCTCTTGCAAATAATGTAAACATGAGCACAACATCCCCGTTGCGCGTGTGTCGCGGATGTCTCGCTACAGACGCACGACTGTACGACATGCGCCAGGACCGACTGCTGGAGGCCTATAACACACTACTGGGTACCACTGTGCAAGTATCAGATGACCTGCCACATTACTTATGCAGCTACTGCGCAGCACTGCTGCTCAAGTGTGACACATTCAGAACAAAGTGCATAGATACACTAATAGTGCTTAGAAATGCTCAACACCAACATATAGATATTGCTACAGAACAAATAAAAAATGTAGGCCAATCTAAGTACTTCAAAAAAATTCAATATAACAATATAAATATAGTTGATAAAACTCTAAAACGCAACAATTCTAGTATATCTACAAACACTGATATATCTTCAGAATCTGATATATCTTTAGATTCTGATATATCTTTAGATTCTGATATATCTTCAGATTCTGATGAATCTTTAGATTATGATTTAAGTGATAACACTGATAGCTCTGATACTGAAAATGTAAAAAAACATCATTTAAAAGTGAAATCAAATTTTAGAAGACACAAAATTATTGACAAAGAACAAGACTATGCTGCAAATAATTCTAACAATGAAATTAAAAGCCTACTTAAGAACTACTTTGATACTGAAAGAAATGGATTATTAAAAGACTTTAAGGTTAACTTAGATTGTGAAGAAATGAAAGGTATAAGTAACATAAGAGACCATCATATGCATCAGTTGTCAGAAATTATTAATCATATTCAGTATTCTAGTGAGAGAAGTAATCAATTACTAAAGATTTTGGATGATGATACACCAAATTGTAAAAATAATGCCTCAAAATCTATCACTACCATTAAAAAAACTAGAGTTATAAAACAAGAATCCAATTCTAATGCAAAAGCTGAAGCTACAAATAAACAGGAGTTAGATCTAACAGGTAAAGAACATGAACAAAAGGACATGGTACAAGAGAATGCAAATACACCAATATTAGTAAGTCATATTGACATTAAACCAATCATCAAGGATGTTATTAAAACAGATGAAGTAAAATTAGAAGTATCAAAATATGAAACAAACGAAATTGAAATCCAATTTGATGAAATAAACGAAACCTTAGACTCAGAAGGCGACATTGCTACTGCAGACTTAAAATTGGATTCTAAGACATCGAATTATAAACAAATAGGTGCAAATTATAGAGGATGTAACAAAATCATCAATAGAATATTAAAAGGACGAGAAACAAAGAAAAAGGTAACCAATGTCTATGGAATGTATAACACAGAGGTAAGACAACTGAGCAAAGAGGAACAAATAAACGAAATTTTTAAACGTAAGCAGTCAGAGAATTATAAAAATGGACAGTTCAAATGCGAGATTTGCTTTAAAGGATTCCTTATTGAAGAAACTTATAAGAATCACATGTCAATACATGATGATATCAGCGGCAAGTTCGTGTGTGACATCTGTCAGTGTCACTTCATGACTAGCACGAGGCTCGGCAGACACAAAGAACGTCACGCTAAACTATATATTTGCAAAGAATGCGGACACACCACGTGCCATGCCACTCGAGCAGCCGAGCATTTCAAATGGCACAGTGGAAAGAAATTCTCCTGCGAGACTTGTGGAAAAGAATTTAAAACAAAATCAACTAAATACGGACACATTAAGATGTGCCACCCGACCAGTGAACAGTTGGTGCATTGTGAGATCTGCGGAGACTCATTCAATGGACTGGCAGGACTCAAAAATCATGATAATAGGTCACATAAAGAGATGTACTCACCGGAGTGTCGATGTTCTGGTTGCGACACTCAGTTCTACTGCTCGGACGCGTTTAAGGCGCATCAAGGAACCGACGGACTGTGCGACACGCTACACAAGTATTGTGTGCGCTGCGGTATGTCGTTTGAGACTGAACAACTGCTGAAGGAACATGAGATAGAACAACGGAAACCACGTAATGATTTTAACTGTGAAGTGTGCCATAAGAAATTCAAATTATTCTGGAAATTAAAAAAACACCAGAGATGTCACTCTACCACGTATCCTAATTACATGAAAAGGTATAACGCGAGAAGTTCTGTGAGAGAACATGAGAAAAACGAGAATAAATCAATGATATGTGAGTTGTGCGGGAAGTCAATGAAGAATGCTGGTGCTCTTAAAGTACATTACAGTGTGGTGCATTCAAGTGACAAGCCATTTAAATGTACCGTCTGTTCTAAAGCATTCAAAACATCTGAATTGTTGAAGATACATACGAGAATACACACGGGAGAGCGCCCATACCAATGTCAGAGTTGCCCGAAATCGTTCTCGAGCGCATCAAACCTTAGACGGCATAACGTTGTACACACAGGGGAGCGATCACATTCGTGCGATGTCTGCGGGAAGAGCTTCCAAACATCAACCAGCGTCAAAGTGCACATACAAACTGTTCACATGAAGATGCCGAAGCCTCGCAATCGGAAGATGAAAAGTTAG
- Protein Sequence
- MALANNVNMSTTSPLRVCRGCLATDARLYDMRQDRLLEAYNTLLGTTVQVSDDLPHYLCSYCAALLLKCDTFRTKCIDTLIVLRNAQHQHIDIATEQIKNVGQSKYFKKIQYNNINIVDKTLKRNNSSISTNTDISSESDISLDSDISLDSDISSDSDESLDYDLSDNTDSSDTENVKKHHLKVKSNFRRHKIIDKEQDYAANNSNNEIKSLLKNYFDTERNGLLKDFKVNLDCEEMKGISNIRDHHMHQLSEIINHIQYSSERSNQLLKILDDDTPNCKNNASKSITTIKKTRVIKQESNSNAKAEATNKQELDLTGKEHEQKDMVQENANTPILVSHIDIKPIIKDVIKTDEVKLEVSKYETNEIEIQFDEINETLDSEGDIATADLKLDSKTSNYKQIGANYRGCNKIINRILKGRETKKKVTNVYGMYNTEVRQLSKEEQINEIFKRKQSENYKNGQFKCEICFKGFLIEETYKNHMSIHDDISGKFVCDICQCHFMTSTRLGRHKERHAKLYICKECGHTTCHATRAAEHFKWHSGKKFSCETCGKEFKTKSTKYGHIKMCHPTSEQLVHCEICGDSFNGLAGLKNHDNRSHKEMYSPECRCSGCDTQFYCSDAFKAHQGTDGLCDTLHKYCVRCGMSFETEQLLKEHEIEQRKPRNDFNCEVCHKKFKLFWKLKKHQRCHSTTYPNYMKRYNARSSVREHEKNENKSMICELCGKSMKNAGALKVHYSVVHSSDKPFKCTVCSKAFKTSELLKIHTRIHTGERPYQCQSCPKSFSSASNLRRHNVVHTGERSHSCDVCGKSFQTSTSVKVHIQTVHMKMPKPRNRKMKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252130;
- 90% Identity
- -
- 80% Identity
- -