Afla003453.1
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- -
- Assembly
- GCA_947623365.1
- Location
- OX392496.1:7232225-7254197[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.18 12 6.9 0.8 1 23 410 432 410 432 0.91 2 12 0.1 6.6 7.7 1.8 1 23 439 461 439 461 0.95 3 12 0.91 59 4.8 0.8 1 12 465 476 465 487 0.77 4 12 0.0028 0.18 12.7 2.1 1 23 492 515 492 515 0.95 5 12 0.18 11 7.0 0.1 2 19 523 540 522 545 0.88 6 12 7.2 4.6e+02 1.9 2.1 3 21 555 573 553 574 0.92 7 12 0.05 3.2 8.7 0.1 2 19 584 601 583 603 0.93 8 12 0.00046 0.029 15.1 5.7 1 23 612 634 612 634 0.97 9 12 0.0013 0.082 13.7 0.4 2 23 660 682 659 682 0.94 10 12 1.9e-05 0.0012 19.5 0.7 1 23 688 710 688 710 0.98 11 12 0.02 1.3 10.0 2.8 1 23 716 738 716 738 0.98 12 12 9.7e-06 0.00063 20.4 0.8 1 23 744 767 744 767 0.97
Sequence Information
- Coding Sequence
- ATGAGCACAACATCCTCGTTGCGAGTGTGTCGCGGATGTCTCGCTACAGACGCACGACTGTACGACATGCGCCAGAACCGACTGCTGGAGGCCTATAACACACTACTGAGTACCGCTGTACAAGTAACAGATGACCTGCCACATTACTTATGCAGCTACTGTGCTGCACTGCTGCTCAAGTGCGACACGTTCAGAACAAAGTGCGTAAATTCACTAATAGTGCTTGGAAACACTAAACAACAACATTTAAATCTTACTTCAGAACATATAAAAATAATAGACGGACCTACATACTTGATACAATCTGAATTAGAACATATTAGTTATGTAGATGATACTCCTGAACAAAACTATTCTTATACATATTCAGATTCTGATGATTCTATAGATTGTGCTTTAACAGCTGATTCTGATTGTTCAGTTAGTGAAAACAAAATAAATTTTAATTTAAAAGCCAAATCAATGATTAAAGAACATGACTATGCGATAAGATATTCAGATAATGATATTACAAGACTACTTAAGAAACACTTTGGTAGTGAAAGATGTTTATTAAAAGACTTTAAAGTTAACATAGATTGTGAAGCAAGTGAAGATATAAATCACATTAGAGACCATCAAATGCATCAGTTGTCTGAAATTATTAATCATATACAATATTCTAGTGAGACAAGTACTGAATTACTAACAATATTAGATGAAGAAATAGTAAAATGTAAAATCTCGAAATCAAAGTCCAATCCAATACTTATAACTGAAAATGAAGAGATGGTTGCTCAAGTAAGTAAAGAGCATTTACATCAGGACATAGTACAAGATAATACTAATAAATCAATATTAGAAATACATTCTGATGTTGAAAGTGTAGATTTAAATGTAGAAATTCCTTGTTTGCTTCAAAATGACGAATCAAACATAGAAGTATCTCAAGATGAACTATTCGTCTTTGAAACCCAGTATGATGGAATAAACGAAACCTTGAACCTTGAAGATTCGGAAGAATATATTCCTATTCCAGACCCAAAAACCAACGCGAAAAAATATGTACCAAATAAGATACGCTGTAAAAATATCAATGGAAAATTAAAAGAACGAAAAATTGAGAGGGACAAGATTACCGCTGATACCTTTGCAAAATATAACACAGAGGTAAGACACCTAAGTAAAGAGGAACAAATTATGGAAATTAAAGATAGAAAGGAGTCTGATAATTATAAAAATGGGGAGTTTAAATGCAACATTTGCTTTAAAGGATTCCTTATTGAAGAAACATATAAGAATCACATGGTGCTACATGATGATTCCAGCGGCAAGTTCGTGTGTGAAATCTGTCAGTATCACTTCTTGACAAAGAGGGCGTGGATGAAGCACCAAGGGTACCACAGTAAAGTATTTACTTGCAAAGAATGCGGACACACTACGAAGAAGGGAGCAGTAGCAGTTGAACATTATAAATGGCACAAAGGAAATACGCACTCCTGCGACTATTGTGGGAAAGAATTCCGAAAAAGTACAAGTAAATACGGACATATTAAGGTGTGGCACCCTACCAGTGAACAACTGGTGCGTTGTGAGATCTGTGGAGACTCATTCAATGGACCCGCGGGACTCAAGTTACATGATAAAATGTCACATAAAGAGATGTTCTCACCGGAGTGTCTATGTTCTGGTTGCGAAACTCAGTTCTACTGCTCGGACGCGTTTAAGGCGCATCAAGCGACCGACGGACTGTGCGACACGCTACACAAGTATTGTGTGCGCTGCGGTATGTCGTTTGAGACTGAAGAACTGCTGAAGGAACATGAGATAGAGCAACGGAAACCACAGAATCAGTTTAATTGTGACGTGTGCCACAAAGTGTTTACAAATTTTCCTAAGTTAAAAATGCACCAGCGTCACCACCAGCCCACCTATAACAGGAATCGCAAGTCGTACAACTCCAAGCGCCCCAAGAGTAGCGGCCCTACTTTTGGGCTCATGTGTGAACTGTGCGGGAAGGTCTCCCCGAACAAGGCCACTCTACAGCTGCATCATAACTACGTACATTCGACCGAGAGACCGTTCCCGTGCTCACTCTGCACGAAGACGTTCAAAACTGCCATCAGCTTAAAGGTCCACTCGCGCGTCCATACTGGAGAGCGTCCGTTCAAGTGCGAGCGCTGCGCGAAGGCGTTCCCGTGTCGGTTCAATCTCGAGAGACATCAATATATCCACACAGGAGAGCGTCCACACTCATGCGATGTCTGCGGGAAGAGCTTCCAAACGGCATCTTACGTCAAAGAGCACATACAAACTGTACACATGAAGATACCCATGCCGCCGAGGATTCGCAATAGGAAGAAGAAAATACAATGA
- Protein Sequence
- MSTTSSLRVCRGCLATDARLYDMRQNRLLEAYNTLLSTAVQVTDDLPHYLCSYCAALLLKCDTFRTKCVNSLIVLGNTKQQHLNLTSEHIKIIDGPTYLIQSELEHISYVDDTPEQNYSYTYSDSDDSIDCALTADSDCSVSENKINFNLKAKSMIKEHDYAIRYSDNDITRLLKKHFGSERCLLKDFKVNIDCEASEDINHIRDHQMHQLSEIINHIQYSSETSTELLTILDEEIVKCKISKSKSNPILITENEEMVAQVSKEHLHQDIVQDNTNKSILEIHSDVESVDLNVEIPCLLQNDESNIEVSQDELFVFETQYDGINETLNLEDSEEYIPIPDPKTNAKKYVPNKIRCKNINGKLKERKIERDKITADTFAKYNTEVRHLSKEEQIMEIKDRKESDNYKNGEFKCNICFKGFLIEETYKNHMVLHDDSSGKFVCEICQYHFLTKRAWMKHQGYHSKVFTCKECGHTTKKGAVAVEHYKWHKGNTHSCDYCGKEFRKSTSKYGHIKVWHPTSEQLVRCEICGDSFNGPAGLKLHDKMSHKEMFSPECLCSGCETQFYCSDAFKAHQATDGLCDTLHKYCVRCGMSFETEELLKEHEIEQRKPQNQFNCDVCHKVFTNFPKLKMHQRHHQPTYNRNRKSYNSKRPKSSGPTFGLMCELCGKVSPNKATLQLHHNYVHSTERPFPCSLCTKTFKTAISLKVHSRVHTGERPFKCERCAKAFPCRFNLERHQYIHTGERPHSCDVCGKSFQTASYVKEHIQTVHMKIPMPPRIRNRKKKIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252248;
- 90% Identity
- -
- 80% Identity
- -