Afla009035.1
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- -
- Assembly
- GCA_947623365.1
- Location
- OX392467.1:6546085-6564583[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00045 0.029 15.2 0.2 2 23 142 163 141 163 0.93 2 10 0.00065 0.042 14.7 2.4 1 23 169 191 169 191 0.96 3 10 0.00014 0.0093 16.7 0.5 1 23 286 308 286 308 0.98 4 10 0.00068 0.044 14.6 0.0 3 23 394 415 392 415 0.90 5 10 0.0037 0.24 12.3 0.1 1 23 430 452 430 452 0.96 6 10 2.8e-06 0.00018 22.1 0.2 1 23 483 505 483 505 0.98 7 10 0.0007 0.045 14.6 0.2 1 23 511 533 511 533 0.97 8 10 0.00039 0.025 15.3 0.3 1 23 539 561 539 562 0.95 9 10 0.034 2.2 9.2 1.0 1 23 575 597 575 597 0.96 10 10 0.043 2.8 8.9 0.0 1 20 776 795 776 798 0.93
Sequence Information
- Coding Sequence
- ATGGATACAGTTGGAGAGGAGTTCAACCTCCAATGGGAGGAAGAAGTTATTGTGAAGCAGAGCCCAAGAAGAGCATCTGAAGAAGGAATATGTGGCCTTGATAATGTGCAGACAGGATCATACTCTAACATGACATCTGAAGGGTTCATAGAAGATACAGATCAAATGGCAGCAGAGAACCTCATGTTCTTGGCACAGGATGTAGTGAGCTACACAGAGACGGCAGAACTTGCAGATGATCCAAATGTGGAGTGTGTTACCGAGGAAGTCATCACTGATGATTGGGTCACAACGGGTGGTCAAGAACGTGTTGAAGTCCCAATGGATCATCTAACACATCCAGTCTTAGTTGTAAAACAAGAAAATGATATTGATGTACCTTTACCAACAGATCAAGATGAGTATACAGCGATGCGACCGTGGCCGTGCGACTTTTGCTCGCGGCGGTTCCGCAAGAAGGCGGCGCTGATGAACCACATGGTGGCGCATCAGAACGACCGGCCGCACGCGTGCAACCTCTGCGGCGTGCGGTACGTGCGCAAGTGTGATCTCATGAACCACTTAAAAGTGCACGCCTATGTACCGGACAATCAAGATGCTGTCGATTTTGAAGAAATGTTAGACAACAACCAAATGTTAAAACCAAAGAAGAAGAGAGGAAGGCGGAAAAAGAATCCTGAGCCAGTTGAGGAGAACGGGTTGTGGGAGAACATGACATCAGCGCGCACGCAGCAGTGGTCGCGGCGCGCGCGGTCGCCGGCCAAGCCGCCCCCCACGCCGCCCTCGCCGCCCTCACCGCCCTCGCCGCCCTCCCCGCCCTCGCCGCCGCCGCCCCCGGCCGACCCCTCGCGCCCCTTCGTGTGCCGACACTGCGGGGTCGGCTTCGCCAGGGAGAAGGCGCTGCAGTCGCATTCTCGTGTCCATGGAGGCGACTCACCTATGGAGTGTGCCGAATGTGGGGAGCTGTGCTGGTCGCGCGAAGCTCTCGCGAGCCACGCCGCGCAGCGACACCCACATCTACCGCACCTCACATCAAGAGAAGCTCACGCTGAGGCCGCTTATAATAACGACTCAGATTCCGGAGACGACATGGAGTTCCGTCTGTCGCCGGTGTCGGCGGCGACTGCGGCGGGCGGCGATCGTGCCGTGTTCGACACCATGCGCGGCCCGGAGCTGTTCTGTCAGGACTGCGGCGTCGCCTTCCAGCGAGCCGATCTACTCAGGAGGCACGTTGCCGCCGCTCATAGCTATAAGCGTCACGACAGTACGAGCAGCACGTGGGGAGAGCACGTGTGCGAAGTGTGCGGCGAGAGCTGCCCCGACGCGCTGCAGCTGCTGGCGCACGCCGAGCGGCACGCGGACCGCCCGCGCCCCCTCGCCAACACCAGGTTAAAGCGGATAGGTAGAGGTAGAAATAATACGTCATCGTCGAGTAGTTCACGGCAGTTCCCGTGCAAAGAGTGTGGCAAAGTGTTTGGGTCGCGGAGTTCGCAACAGATTCATATCCGGATCCACACGGGCGAGCGGCCGTACGCGTGTCGGTTCTGTTGGAAAGCGTTCGCGGATGGCGGCACGCTGAGGAAACATGAGAGGATACACACTGGCGAGAAGCCGTACGCGTGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGACGCGCCAACGGTGGCCCTGCATACTGCTGCGTGGTGTGCGGTCGGAATTTACACTCTAGTGCGGAACTTGTGCAACATTTAATACAGCATTGCGACGCTAATACTGCGCTCAAGAGACAGCCGCAGGCCGGTCCTCGGAAATACAAACGGCGACGGAAGCTGAAATCGGAAGTGTCGAGTCCCCCGCAGCGCGAGTGGAGCTCCCCGCCGGCGCGGCACCCCGCCCGCTCGCCGTCCCGCTCCCCCGCGCGCTCTCCCTCCCCCTCGCCCCCGCCCTCACGCGCGCCGTCCCGCTCGCGCTCGCGGTCCCCGGCGCGCTCTCCGTCTCGCTCGCCCCCGCCGCGCTCCCCGCCGCGCCGCCGCCGCCGCCGCCTCGACCCACCCGCCAGACCTAAGATGATACACACAGAGAATCCTAGACCTAGGACTAAACAGGTGCGCACCCGGCGGCCGCCGCGCCACCCCGCCGACGACCTGCGCGCCATCCAGCCGCCCCGCGCCAGCCCCTCCCCCTCGCCGCCCCGCGCCAGCCCCTCCCCCTCGCCGCCCCGCGCCAGCCCCTCCCCCTCGCCGCCCCCGCACCCGCCCCGCCCCTCGCCGCCCCGGCACGAACTCGGCGGCCCCTTCAAGTGTGAGATGTGCGCGCTCGAGTTCCCGCGACGCGACGCGCTGCTCCTACACGTGCCCGTGCATATCTGA
- Protein Sequence
- MDTVGEEFNLQWEEEVIVKQSPRRASEEGICGLDNVQTGSYSNMTSEGFIEDTDQMAAENLMFLAQDVVSYTETAELADDPNVECVTEEVITDDWVTTGGQERVEVPMDHLTHPVLVVKQENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAYVPDNQDAVDFEEMLDNNQMLKPKKKRGRRKKNPEPVEENGLWENMTSARTQQWSRRARSPAKPPPTPPSPPSPPSPPSPPSPPPPPADPSRPFVCRHCGVGFAREKALQSHSRVHGGDSPMECAECGELCWSREALASHAAQRHPHLPHLTSREAHAEAAYNNDSDSGDDMEFRLSPVSAATAAGGDRAVFDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSTSSTWGEHVCEVCGESCPDALQLLAHAERHADRPRPLANTRLKRIGRGRNNTSSSSSSRQFPCKECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRNLHSSAELVQHLIQHCDANTALKRQPQAGPRKYKRRRKLKSEVSSPPQREWSSPPARHPARSPSRSPARSPSPSPPPSRAPSRSRSRSPARSPSRSPPPRSPPRRRRRRLDPPARPKMIHTENPRPRTKQVRTRRPPRHPADDLRAIQPPRASPSPSPPRASPSPSPPRASPSPSPPPHPPRPSPPRHELGGPFKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01416135; iTF_01417091; iTF_01083604; iTF_00761950;
- 90% Identity
- -
- 80% Identity
- -