Afla007911.1
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- B0310.2
- Assembly
- GCA_947623365.1
- Location
- OX392477.1:12238781-12242435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4e-06 0.00026 21.6 5.7 1 23 208 230 208 230 0.97 2 11 1.9e-05 0.0012 19.5 3.9 3 23 238 259 237 259 0.98 3 11 0.0001 0.0067 17.2 0.4 1 23 269 291 269 291 0.96 4 11 0.46 29 5.7 6.2 1 23 298 320 298 320 0.96 5 11 0.15 9.5 7.2 3.2 1 23 326 348 326 348 0.97 6 11 7.9e-05 0.005 17.6 0.5 1 23 354 377 354 377 0.95 7 11 0.0066 0.42 11.5 1.7 2 23 383 402 382 402 0.97 8 11 1.5e-05 0.00095 19.8 3.0 1 23 408 430 408 430 0.97 9 11 4.9e-06 0.00032 21.3 1.1 1 23 436 458 436 458 0.98 10 11 2.6e-05 0.0016 19.1 0.4 1 23 464 487 464 487 0.97 11 11 0.00067 0.043 14.6 2.1 1 21 493 513 493 514 0.96
Sequence Information
- Coding Sequence
- ATGGCTAACGTTAAAAGTAGAGTAAAGGCACCCAAAAGTGCAACTACGAGGAGGGCACGTAATACAAAAAAATCATTGACAGGGGCCAAAGAAATAACGCCAAAAGTGATTAAAATCGACCGTAATGTAGTCATGAAAAGACCGAGCGATTTTAAGGCACTCACTTCAGACGAGAAGGTACAGTATTTGCTACAAAACGGTCATCGATTAAAGGATAAGTTTGTAAAGAAACCCGTCGAAAATGGAAGGACGAAGAAAGATTCTTTAAAAAGTCAAGGCAGATTAATGTCTCAGATTGGAAGGATAAAAAAGAATTGCAAAGACAAGTTTGAACTTATTGACAACATTCTCAAGAGTGAGTTGATGATTGAGGACTTTTCTAAAGACAACCTAAAACGTCATACACCGAGAATAAACAATAACAATGATATTGGCATAAGCAATCAGAATAGAACTAAAGCCTCATTACCCGATGATTTGAACAAAAAAGCCGCAAGGGAAATAGTTGTGAAAAATAAACGGAGAGCAACAAAAAAGGCTGTAAATAAAACCGATGAAAAAAAATCAACAAAGACAAAACAGGTGACTCTAAGTAATGGATTAGTCCTCACATTATCATTGTTTCAGTGTGATTACTGCAGTAAAACATTCAGTAATAAGTCATGTTTACGTAAACACATTTATTTACATCTCGGTTTGAAATCCCATGGATGTCCGCACTGTAAAAAGAAGTTTATACACCGGGTAAACTTACAGAACCATATAAAACGGATACATGCTAATGATGATGGTACAATAAAACATCACATGTGTGAAATCTGTGACAAACCGTTCATGCTTAAGGAAAACTTAAATTTACACTTGGCAAGTCATGTTAAAAATGAGAATTCTTTCAAATGTATTTATTGTGAAAAGAAGTTTTCTCACCACCTTCTGCTGTCACAGCATGAGAAGCAGCACTTGGTAACCGGCCGGTATCAATGCACAATATGTAATATGAGCTATGACTGCCGTACCCGTTTATCTCTACATATAAAGAGCCATCTAAAAATCAAAGATTACATTTGTCAATATTGTGGGAAAGAGTTTCTGAGGCAGAATTCTTTACGGAGACATGTTGAAATAAGTCACGGTGGACATAGAATTCAGTGTCCGATTTGCAATAAGAAATTAAAGGGGCATTTGACTGAACATTTAAGGACACATGAGAAGAGGCGTCCACATGTTTGTGCCGTTTGTGGACAGCGTTTTACACAGTCCACACAGTTGAATGTCCACCATCGGTCTCATACAGGTGATCGTCCATACCCTTGTAGGATCTGTAATCGTCCTTTTACACATTCTAATGCCCTAATGCTACACATACGTCGACACACTGGTGAGAAGCCATTTATTTGTGCCATGTGCCCAATATCTTTTTCTCAACTACCGCACATGAAGGCACACATGCGTAAAATCCACGGTAAAGAGAACCCTTACAGATGTACAAAATGTGATCAGTTTTTCAAGTTAAAGGCACACCTCGATACCCATATTAAGTCATGCACCGTTGGGGACAAAGAGCTGTCGTTTGAAGAGAAAATCCAAGCATCCGTTCAGTATGAGGAAATTGAGGTGGAATCTGTGATGACACTGTCACGGATGAGGTTCCTGCTTGCTCTACTCCTCACCATGATCGCTTCCAAAGAGAAACTCAAATTCTTAGGTTTCAATAAACGTCTGATAGACGAACTTCTCGTGGAATCCATAGAAGCTATGGGCCAGAAACCATGCACTGACGTTTCATTAACTCCATTGAAACGGCTCAAGGCCAATATAAAGATACTACTTGATAGTACAGTGCCGAAAACACAGATGCAGAAGTTTGAAAAGGAGAATAAAACAACAGAAGAAATATTAGAAATGTTGACTGATGAGAAGAAGAATGAGTGA
- Protein Sequence
- MANVKSRVKAPKSATTRRARNTKKSLTGAKEITPKVIKIDRNVVMKRPSDFKALTSDEKVQYLLQNGHRLKDKFVKKPVENGRTKKDSLKSQGRLMSQIGRIKKNCKDKFELIDNILKSELMIEDFSKDNLKRHTPRINNNNDIGISNQNRTKASLPDDLNKKAAREIVVKNKRRATKKAVNKTDEKKSTKTKQVTLSNGLVLTLSLFQCDYCSKTFSNKSCLRKHIYLHLGLKSHGCPHCKKKFIHRVNLQNHIKRIHANDDGTIKHHMCEICDKPFMLKENLNLHLASHVKNENSFKCIYCEKKFSHHLLLSQHEKQHLVTGRYQCTICNMSYDCRTRLSLHIKSHLKIKDYICQYCGKEFLRQNSLRRHVEISHGGHRIQCPICNKKLKGHLTEHLRTHEKRRPHVCAVCGQRFTQSTQLNVHHRSHTGDRPYPCRICNRPFTHSNALMLHIRRHTGEKPFICAMCPISFSQLPHMKAHMRKIHGKENPYRCTKCDQFFKLKAHLDTHIKSCTVGDKELSFEEKIQASVQYEEIEVESVMTLSRMRFLLALLLTMIASKEKLKFLGFNKRLIDELLVESIEAMGQKPCTDVSLTPLKRLKANIKILLDSTVPKTQMQKFEKENKTTEEILEMLTDEKKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01416115;
- 90% Identity
- iTF_01416115;
- 80% Identity
- -