Afla008035.2
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- -
- Assembly
- GCA_947623365.1
- Location
- OX392477.1:15661504-15674597[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.6e-11 3.4e-08 33.4 0.0 4 39 179 215 176 219 0.89 2 4 6e-11 3.1e-08 33.5 0.3 2 39 231 268 230 271 0.92 3 4 4e-16 2.1e-13 50.1 0.1 2 45 286 330 285 330 0.96 4 4 2e-18 1.1e-15 57.4 0.1 1 43 337 380 337 381 0.96
Sequence Information
- Coding Sequence
- ATGCTCGGCCACGGACTATCCCGAGTGAAATGCGAACCTCAGTCGGATGATGAAGACAGCAACTCACAATTTATTCACGGATATTTAACCAATCAGCTACCTTCATCGGTTTATCCAGTGAATATCAAATCTGAGTGCCTGATTGAAGAGAATGTGCCATCGCATCTACTGCAGCATTTACAAGGACCAGGTCTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCGGTGTGTGTGAAGCAGGAACCGGCGGACACTCCCGCCTTGACTCTCGAGACCTTGCAGTCTGCTCCTCATAATGCTGCGGGCTCCATTCTTATCGATAGACACATGTCAGTGTCGGCGTTTGAGCTGAAAAACGAAGTGCCTGACTCCTCGGAGTTTATGCCATTATTGGCAGTCAAGGATGAACCTGTATCGGAAGGAGAGCAACATCAACTAAGTGGTGACGATACAAGCGACTCAAGTGGTGCACAGCATGAGCCCACCACACGCGGCAGTCCCAAGAGCTGGACGCAGCAGGACATGGATAACGCGCTTGAAGCACTGAGGAAACATAATATGAGTCTTACTAAGGCATCAGCTACATATGGTATTCCCTCGACGACACTCTGGCAGCGCGCGCACCGATTAGGAATCGATACACCGAAAAAGGAAGGCGCTTCGAAATCTTGGAGTGAAGCGGATTTGCGTGGAGCCCTGCATGCTCTGAGGGCCGGCGCTATATCTGCTAATAAGGCGAGCAAAGCTTATGGCATCCCAAGCAGCACACTTTACAAGATAGCTCGTCGCGAAGGCATCCGGCTGGCGGCTCCGTTCAATGCGGCTCCCACCGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGCCTCCATCCGCTGCGGAGCCACCTCCGTGCAGCGAGCCGCCTCACAGTATGGGATACCCACGGGCACACTGTATGGGCGATGTAAGCGTGAAGGCATAGAGCTATCTCGTTCCAACCCTACACCGTGGTCGGAAGATGCCATGGGGGAAGCACTTGAAGCAGTTAGGGTTGGTCAAATGTCAATAAACCAGGCAGCAATACACTACAATCTGCCATACTCGTCGCTTTATGGACGATTCAAGAGATGCAAATACCAAGCACAGGGTCTTCAACCAATTCAACAAGAAATACAAAAGATCAACGAAGCGGAACATCAAAATCAAGACATGTACTACCAGCAACAGATGCCCACCCACCCAGTAAATCACCTCGAAGACCAATCACACGCTCCGTACGTACAACACGTTCATGAATATATGCAGGATTCGTCGACACATAACATGTTACAAGACCAGTATGGACAAGCAATGTATTACAATCATAATTTTAATAGTATAGCCACCAGCTGA
- Protein Sequence
- MLGHGLSRVKCEPQSDDEDSNSQFIHGYLTNQLPSSVYPVNIKSECLIEENVPSHLLQHLQGPGLEELAPLAPAGPAATPVCVKQEPADTPALTLETLQSAPHNAAGSILIDRHMSVSAFELKNEVPDSSEFMPLLAVKDEPVSEGEQHQLSGDDTSDSSGAQHEPTTRGSPKSWTQQDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALASIRCGATSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQGLQPIQQEIQKINEAEHQNQDMYYQQQMPTHPVNHLEDQSHAPYVQHVHEYMQDSSTHNMLQDQYGQAMYYNHNFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761549;
- 90% Identity
- iTF_00761549;
- 80% Identity
- -