Aeph013687.1
Basic Information
- Insect
- Acentria ephemerella
- Gene Symbol
- -
- Assembly
- GCA_943193655.1
- Location
- CALPDL010000093.1:2077695-2084661[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.1 6.8 7.6 0.6 1 23 56 79 56 79 0.97 2 17 6.1 4.2e+02 2.0 1.9 2 23 153 175 152 175 0.96 3 17 0.00055 0.037 14.7 0.9 1 23 180 203 180 203 0.94 4 17 0.04 2.7 8.9 3.6 1 23 206 229 206 229 0.96 5 17 0.01 0.7 10.7 0.2 1 23 235 258 235 258 0.95 6 17 0.0029 0.2 12.5 1.2 2 23 266 288 265 288 0.95 7 17 0.16 11 7.0 0.8 1 23 293 315 293 315 0.98 8 17 9.5e-08 6.5e-06 26.6 0.9 1 23 321 343 321 343 0.98 9 17 1.6 1.1e+02 3.8 0.3 1 23 409 431 409 431 0.92 10 17 1.4 95 4.0 0.2 3 23 458 478 457 479 0.93 11 17 0.019 1.3 9.9 0.0 2 23 502 524 501 524 0.96 12 17 0.00019 0.013 16.2 1.1 3 23 535 556 534 556 0.98 13 17 0.0035 0.24 12.2 0.7 3 23 563 584 562 584 0.97 14 17 0.0034 0.24 12.2 1.7 1 23 590 613 590 613 0.98 15 17 0.00061 0.042 14.6 2.2 2 23 620 642 619 642 0.95 16 17 0.013 0.91 10.4 1.3 1 23 648 670 648 670 0.94 17 17 0.0011 0.072 13.8 1.3 1 23 676 699 676 699 0.91
Sequence Information
- Coding Sequence
- ATGTTAGAAGAGGTGAAGGTTCCTATTGTTATTATTGGGAGACATAAGTGGAGAGAACCTCAAAACGAAGTGAACCGTTTGCAGCGTCTCTGTAAAGTTCGGAGCAATATCCTCACCGTCCTCCGTTACAGCGAAGTGCTGCCATTCAAATGGCACACTAAAGGATTCAGCTGCTTCTATTGCGCCAAGCCGTTGAAGGATCGCCTCGCTATCAAAGAACACATGCAATCTAAACATAATAATATGGACCTCGACGGTTTCATACCGAAAAGTATCATATCCAAAGACACTCCTGTAAAAATAGATATCACAGATATTGCTTGCAAATATTGTCCAGAAATCGAGATAGAATCTTATGAAGAACTTGTTTCTCATATTACTTCAGTACACGGAGAAGATTACGATGACACAGTGGGCGTATGCTTCCTACCTTTCGTTTTAAATCAGAACATAAACCAATGTGTCTATTGTGCGTGCCAGTACGACAATTTCTTTTCGATTGTGAATCATATGAACAAGCAGCACATAACACACTCACATATGTGCCAGATTTGCGGGCTAAGTTTCGTAAATATCATCAAACTTAACAGACATACTAAAGCCCGACATATCGGGTTCAAGTGCACTTTTTGTTTTAAGATTTTTGATTCTTATATTAAGTTGGAAAGTCATAAATCAAGATTCCATGGTCAAGTAAAAACTTACGACTGTAATTTGTGTAGTGCCAACTTCGATAATGGTTATTTGTTGAAAGTCCACATGGGGAAACTGCACAATGTCGAAAAATATAAAATCCATTGCGAATATTGCCCGAAAGTTTGTACCACGAAAGGTGCTATGGTTCTTCATGTCCAATCGATGCATTCGGATAAGCGATACGAATGTGACCTTTGCGAATATAAAACGACCATCAAATGGTTAGTAACATTGCATAAACGCAAGCATTTTGGGGAGAAAAACTACTCTTGTAGTATTTGTGAAAAGAAATTTGGTCGTTCAAGTAATCTGAGGGTGCATATGAAAGTGCATACGGGAGAACAGTCAGGTGGTCAGAAAGCGTCGAAAAAGGGTCCAGCTCCAATAGAACCAACCTTAGACGTTTCCAAAGTCAAAACTACCAAATCAGGACTTGCAGCTAAGGAAAAACGGAAAATAATGCGACAGAACGTACTACAAGTCTTGAAAAAGTCAACTGCAATGCCGTTCCGGTGGCTCAAGAGTTCTTACAGATGTTTCTATTGTTACGACATATTTCAAGAAGTGGCTGACTTAAAGAACCACCAAGGAGCTCATACAGGCGATGAAATAAAAGAACAAGCGATGAATAACTATTGGGAACCTGTAGTTTATATAGACATTTCTAACGTTGCTTGCAAACTATGCGCCGAGAAGATGAACGATTTATATGATCTCATAGATCATTTAATTGTTCATCACGATACACAGTACAATAAGGATATAGGAATTTGTATGGTAGCTTTCAATCTAGGAGATTTAAATGTTAGTTGTTTGGTCTGTGGTGCTGCTTTCTACACATTTGGACCTTTATTGCTTCATATGAATAAAGAGCACAAAGGCATGGCTTCTACGTCAGCTATTCTCTGCGATGTCTGCGGACAGCATTTTAAAGACGCGTATCTCTTGAAGCTACACTTCAAAACAATTCACGAGAATTCCGGAGTGCTCTGCACGGAGTGTGGCGATAAATTTGAGACCGCTGCAAAGTTGAAAACGCATCAGAAAAATCAGCATGACATGGAAAAAAAGTACAAGTGTTTGGTTTGTCCGGAAGTGTTTCAAAGTCACTACAAAAGGTCCAGGCACATGGCGACTGATCATAAGACTAGGCAGGAAATAAAATGCCTTCATTGTCCAAAGACTTTTGTGTTTCGCAGCATGATGATGACGCATCTTAGGGACACTCATTTAAAAGTTCGGAACCACATCTGTGGCATTTGCGGCTGGAAGGCTTTCAATAGCAACAGGCTCAAAAATCACATGTACAAACATAGTGGGGAGAAGAATTTCAAATGCGATGTGTGCGACAAAGCATTTTCTACTAAGAAGATAATGAAAGCGCACTTTAGTCGTATGCATAAGACTCCAAGCCAGATGCCTGTGATACCCTATAATAATCCCCTCAATTATCCTTCGAATTAG
- Protein Sequence
- MLEEVKVPIVIIGRHKWREPQNEVNRLQRLCKVRSNILTVLRYSEVLPFKWHTKGFSCFYCAKPLKDRLAIKEHMQSKHNNMDLDGFIPKSIISKDTPVKIDITDIACKYCPEIEIESYEELVSHITSVHGEDYDDTVGVCFLPFVLNQNINQCVYCACQYDNFFSIVNHMNKQHITHSHMCQICGLSFVNIIKLNRHTKARHIGFKCTFCFKIFDSYIKLESHKSRFHGQVKTYDCNLCSANFDNGYLLKVHMGKLHNVEKYKIHCEYCPKVCTTKGAMVLHVQSMHSDKRYECDLCEYKTTIKWLVTLHKRKHFGEKNYSCSICEKKFGRSSNLRVHMKVHTGEQSGGQKASKKGPAPIEPTLDVSKVKTTKSGLAAKEKRKIMRQNVLQVLKKSTAMPFRWLKSSYRCFYCYDIFQEVADLKNHQGAHTGDEIKEQAMNNYWEPVVYIDISNVACKLCAEKMNDLYDLIDHLIVHHDTQYNKDIGICMVAFNLGDLNVSCLVCGAAFYTFGPLLLHMNKEHKGMASTSAILCDVCGQHFKDAYLLKLHFKTIHENSGVLCTECGDKFETAAKLKTHQKNQHDMEKKYKCLVCPEVFQSHYKRSRHMATDHKTRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGICGWKAFNSNRLKNHMYKHSGEKNFKCDVCDKAFSTKKIMKAHFSRMHKTPSQMPVIPYNNPLNYPSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -