Aeph016915.1
Basic Information
- Insect
- Acentria ephemerella
- Gene Symbol
- -
- Assembly
- GCA_943193655.1
- Location
- CALPDL010000127.1:1266346-1271450[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0074 0.51 11.2 0.6 2 23 219 241 218 241 0.94 2 12 1.7 1.2e+02 3.7 0.2 5 23 250 268 248 268 0.92 3 12 1.6e-05 0.0011 19.6 0.7 1 23 302 325 302 325 0.95 4 12 0.067 4.6 8.2 0.2 5 23 334 352 332 352 0.95 5 12 0.0098 0.67 10.8 2.0 2 23 359 380 358 380 0.96 6 12 2.8e-06 0.0002 21.9 0.8 1 23 388 410 388 410 0.98 7 12 0.0013 0.086 13.6 1.1 1 23 419 442 419 442 0.97 8 12 0.00023 0.016 15.9 0.2 1 23 448 470 448 470 0.97 9 12 1.2e-06 8.4e-05 23.1 4.2 1 23 476 498 476 498 0.98 10 12 0.00032 0.022 15.5 1.1 1 23 503 525 503 525 0.98 11 12 0.00024 0.016 15.9 6.4 1 23 531 553 531 553 0.97 12 12 0.00024 0.016 15.9 2.1 2 23 560 582 559 582 0.95
Sequence Information
- Coding Sequence
- ATGGCAATAGTTCTGAAGGATTTATGCAGATTATGTGCAAAAAAAGAAGATTTTACTAAAGATCTGCTAGATGCAAGTAATAAGAGTTCTTTAACACTAATAAAGGATCTTGTTCAAATAGCGGTTACTGAGAATGATGATCTGCCTACAAAAATTTGCTTGAATTGTGAAGAAAAAATGGTGTCATTCCAATTATTTATTTTAGAATGTATAAAAGCACAAGAATGTTTAAAAAAAATGTATTTAGAACATAGGGAAGGTCCACAAATTAAACATGAAATAGTTTATGATGAATCAGAACTTATAAAGTCAGAGGTGAAAGATGAGTTAATAGTTGATGATATGGTATTGTGTGCAATGaataatgatgtaacagaatttaataaagattctgtatatgagacagattctgtatatgataaagatgctgattttgataataacagtgatgatgaggatgatgatgatgatgatgattatatggataatgtaactctggcCAGTCTAAAATTGGAAAAGAAATGTGAAAATATAGAACCGGTGAAAAACTTAAAACGGCGATACAGGAAAAAAAACATTACTTATGAAGATTCTGAAGAAATTGAGAAAGTACTACAAAAGTCAAATTTGAAAGTAAGAGATTTTGTCAAATTACGATGTGATATTTGTGAACAAAAAATGAGATCATGGAGTGAGTTGCGTGTTCATTATTTTAAAACACATAAAAGTAAACCAATGGTTAACTGCATATGTGGTTTTGTCATTAGATCTAAAAGTGTTCTTTACAAGCATGTGTCGGATCACAAGATAAGAAATAAGAAATCAAGTAATAATGTAAATGAAACAAAAGATGATGAAGTGGATGCCAAATATGCCAGTCTTAAAATAAAAGATTTTGTCACGTTTTCATGTTCTATATGCCAAAAGAAATATTCCAGTTGGTATAGCTTGCGAGATCATACGGCGTCTGCTCATAAAATAGAACCTGTGGTACAATGTATTTGTGGTATATCACTAAAATCTAAATCAGTTTTGTATAAGCATATACAAGACCATAAAAATCCAAATATGCTTTGTTGTGACAAATGTCCAAGAATAACAAAAACTATAGAAGCACTGAACAAACATAAAATGAGGCACATACCTAAATCAGAGAGAAAGTTTGTATGTTCAACTTGCAATAAAATTTTTGTTACTAAGGATGCCTTGAAATCTCATGAAAGGTCTCATATTCCAATTGAGGATAGAAAAATCTACCATTGTGATGTTTGTGAATTAAGGTTCACAACTCGTTCGTCAGCGGCTTCGCATAAGCGCGTGGTGCACGACAAGATCAAGAGCTACGTGTGTGACCTTTGCGGATACGCGTGCGGCACTAACGGCGAGTTGCGTCAACACCGCGCCATACACAGCGATGACAAACCTTTCGTCTGCAAAACTTGCTCAAAGCCGTTTAAGACCCACTCGAACCTGAAGACCCACATGGACACCCACGAGGACACGTCGTATCAGTGCTACGTGTGTAGTCGCGTGTTGAACAGTCGCCGTACGCTTCGGAAACATCTCCTCGTACATGAAGAAAAGTGCCGTCATGTGTGCTCCTTTTGCCACAAGGCTTTCAAGAGACGCCAGACACTCAAGGTGCACCTTTACACGCATACTGGGGATAAACCGCTCACTTGTAAATGGTGCGATGAGCGGTTCGCGTACGCGTCGACGCTGCGCTCGCACAGACTACGCTGCCACCCAGACAAGATGGCGCCGCAAGCTAACAGCACATCCTACTCGAATTATGCGCACGTTCCTCTTTCGGTGCCAGTCTCTATGCCCATGATGCAGGAAGTACATCAGGACTATATCAAGAATGATGTTGCCGCTAGTACTGTGACGATCGTGAAACACGATTCTGAGGCTATGTAG
- Protein Sequence
- MAIVLKDLCRLCAKKEDFTKDLLDASNKSSLTLIKDLVQIAVTENDDLPTKICLNCEEKMVSFQLFILECIKAQECLKKMYLEHREGPQIKHEIVYDESELIKSEVKDELIVDDMVLCAMNNDVTEFNKDSVYETDSVYDKDADFDNNSDDEDDDDDDDYMDNVTLASLKLEKKCENIEPVKNLKRRYRKKNITYEDSEEIEKVLQKSNLKVRDFVKLRCDICEQKMRSWSELRVHYFKTHKSKPMVNCICGFVIRSKSVLYKHVSDHKIRNKKSSNNVNETKDDEVDAKYASLKIKDFVTFSCSICQKKYSSWYSLRDHTASAHKIEPVVQCICGISLKSKSVLYKHIQDHKNPNMLCCDKCPRITKTIEALNKHKMRHIPKSERKFVCSTCNKIFVTKDALKSHERSHIPIEDRKIYHCDVCELRFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCKTCSKPFKTHSNLKTHMDTHEDTSYQCYVCSRVLNSRRTLRKHLLVHEEKCRHVCSFCHKAFKRRQTLKVHLYTHTGDKPLTCKWCDERFAYASTLRSHRLRCHPDKMAPQANSTSYSNYAHVPLSVPVSMPMMQEVHQDYIKNDVAASTVTIVKHDSEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01081826;
- 90% Identity
- iTF_01081826;
- 80% Identity
- -