Aeph016070.1
Basic Information
- Insect
- Acentria ephemerella
- Gene Symbol
- pacC
- Assembly
- GCA_943193655.1
- Location
- CALPDL010000119.1:38873-42404[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4e-05 0.00092 19.8 0.1 2 21 122 141 121 142 0.94 2 19 0.062 4.2 8.3 0.4 3 23 148 168 146 168 0.96 3 19 0.022 1.5 9.7 1.2 1 23 173 196 173 196 0.97 4 19 0.00027 0.018 15.7 0.2 1 23 201 223 201 223 0.98 5 19 0.57 39 5.2 2.8 1 21 226 246 226 247 0.93 6 19 0.00024 0.016 15.9 1.1 1 23 260 283 260 283 0.95 7 19 7e-05 0.0048 17.5 1.1 1 23 289 311 289 311 0.98 8 19 2.7 1.8e+02 3.1 1.2 5 23 321 339 318 339 0.94 9 19 1.4 98 4.0 0.4 1 23 345 368 345 368 0.87 10 19 1.2e-05 0.00083 20.0 1.5 2 21 496 515 495 516 0.93 11 19 2.7 1.8e+02 3.1 0.0 3 23 523 544 522 544 0.89 12 19 0.55 37 5.3 0.2 2 23 550 572 549 572 0.94 13 19 1.4e-05 0.00093 19.8 0.1 2 23 578 599 577 599 0.97 14 19 3 2.1e+02 3.0 3.6 2 20 603 621 603 623 0.91 15 19 1.3e-05 0.0009 19.8 1.3 1 23 649 672 649 672 0.95 16 19 0.0059 0.4 11.5 1.7 1 19 678 696 678 700 0.92 17 19 0.58 39 5.2 0.1 3 23 708 728 706 728 0.97 18 19 0.0029 0.2 12.5 0.2 1 23 734 757 734 757 0.94 19 19 0.0056 0.38 11.6 1.4 2 23 764 786 763 786 0.95
Sequence Information
- Coding Sequence
- ATGACGTGGTTTCAGGTGGAGTTTGACGGGGGCTTACCACAGGGCCTGTGCCGAACGTGCTCAGAGAGCGCGCTGGCTGCGGTTAACTTCAGACAACTTTGCAAGGAAGCCTTCAACCAATGGACTCAGGTCGTCAGCTTTATGGCAGATATTCAGCCCCCGTCCGAGGAGGATAAAGTGTATTACATATTCTATAACGCTGAAGACAAAGCTGTGATAGGTGACCAGCAGGAGAGAGCTACTAGAAAAGAAATAGCGCTGCTACGTCTTAATTCTGGATTTCAAGATGAAGTAAAAGAAGAACCGTGTGTATTTATGCCAAAGACCATTGCCAAAAGAACACAACGGTCAATGTTTTCCTGGAAATGTCCCGACTGTGGCAAGAAATTCGCTGTTCCAGTCCATTTAAACTCACATTTGAAAAATACTGCCAAAATAGCTTGCAGTATATGCGGTTTAGTTCTTAACAAAAAGAAATTTGCGCAACATTTACGAAAAAATCACGGGACGATTGTGTTTCCTTGCGAGAGGTGTAACCAACTGTTCGATGATCATATCTCTTTGTCCTTGCATATAAAAAAATCACATGGGCGTGATTCCTACCAATGCAATATTTGCGGTAACGGTTACACGAATGATAGGGCTCTGAGTGCCCACATGTACTCCCATACACTTTTCTACTGCAGCCCTTGTGGTCAAAGCTTCGAGAACAGGAAATGTTACGTGTACCACCAAAAACAGTGTAAAATTGCAACACCGACACCTGCTTCCAGCGAATACATTTGCGATCACTGTGGCAATTCGTATACAAAGAAACCATCACTTCGTATCCATATAATACAAAAACATCTGCATGTGCTACCGTACGTCTGCGATACTTGTGGTAAAAGAACCTCAACAATTGCTCATTTGAGATCGCACGAGAAAGTGCATACGATTGAAAGGAAAACATACCAGTGTCACTGTGGGGCGAAGTTACGCACCGAATTAGGTTTTCAGCTACATCAGCGTATCCACACCGGAGAGAGACCTTACGAGTGTGAGGAATGCGGAGATAAGTTCCTATCTGCATCCAGGAGATTAGATCATATTAAACGCAGGCATAGAAGTACGAAAGACATGCCCCATGGTTGCGCGATGTGCTCCGCGCGGTTTGTCGAAGAGGAAAAATTTTGTCCAAAAGGTGTGTGCGTACCGTGCACATCAACTGTGCTAGCCGCACAAGAGTTCCGGGTATTCGTGCGCACCTCACAGATTGCGTGGCAGAAAGCCATCAGCGCAATCCATGACATACCAAAATCATACAACAAATCAGTCAGATCACTTTCCTTGTTTATTAAACCGGACAATTTTCAAACGCACACTATCAAAGATTACACTGGAGGCGAAACCAAAACAGTACTGAACAGGTTAAAACAGCGTTTGCTGAGAAGAGATGCTATAGAGGAAAGAAAACCCAGAATTCCTAGAGCTGGTCCCGCTTGCAGTTGCCCGGATTGCGGAAAATCGTTCTACAGCCCTTTTTATCTTCGAAACCATTTAAAAAACAGCGGGGATAAGGAAGCCTGTGCTCACTGTGGCTCCGTCTACATCAGGGGAAAAGAAATCCAGGAACATCTCGCTGCAGTTCATGGAGAGACAACAGTACCTTGCCAATCTTGTCCAACACTCTTCACAAGCGATATTCGTCTAAAAAAACATGTCCTAAAAGCGCACAAAGTCGGCGCCTGGACTTGTAGCGATTGCGGTCGCAGTTTTCCAGGTAAAGCGTCATTAGAAGTTCATACACAAATGCATACGGTGAGAACTTGCCGCGCTTGTGGTTGCCAATTCACTAATCGGGGCTGCTACAGGGAACACCGAGCGAAATGCGAGCCAGATGCCCTACCGAACAAGAAGGATTTACCCCGTAACAAACGTGCGAACCTGCGAGACCCAGCTACCTTCACATGTGACCATTGTGGAAAGACTTATTTCTCCCGACCTCAGTTAAAGAATCATATAATATGGATTCACATGGATGTGAGACCTCATCAGTGCCAGTGGTGTGGAAAACGGTTTTACACGCCAGCGCGTTTAGCCGAACACTGCGTCGTGCATACAAGAGAAAGGAAATTCGGATGCGATATCTGTGGCGCGAAATTGGTTACGAAAATGGCGGCTATATACCACAAGCGTCGGCATACGGGAGAAAAGCCTTACGAATGCACTGATTGTGGAGAAGCATTTATATCAGCGTCGAGGAGACTTGAGCATGCGAAACGGAGGCACGGCAAGGGAGTGAAGTTACAGTGTCTGCAATGTTCCGCTAATTTTGTGAGGGGACACGAATTGAAGAAACACATGGAAAAAATGCACAGGACTCAAGGAACTAACTTGACGCCTAAAACAAAATTATTTATCAATAACAATTAA
- Protein Sequence
- MTWFQVEFDGGLPQGLCRTCSESALAAVNFRQLCKEAFNQWTQVVSFMADIQPPSEEDKVYYIFYNAEDKAVIGDQQERATRKEIALLRLNSGFQDEVKEEPCVFMPKTIAKRTQRSMFSWKCPDCGKKFAVPVHLNSHLKNTAKIACSICGLVLNKKKFAQHLRKNHGTIVFPCERCNQLFDDHISLSLHIKKSHGRDSYQCNICGNGYTNDRALSAHMYSHTLFYCSPCGQSFENRKCYVYHQKQCKIATPTPASSEYICDHCGNSYTKKPSLRIHIIQKHLHVLPYVCDTCGKRTSTIAHLRSHEKVHTIERKTYQCHCGAKLRTELGFQLHQRIHTGERPYECEECGDKFLSASRRLDHIKRRHRSTKDMPHGCAMCSARFVEEEKFCPKGVCVPCTSTVLAAQEFRVFVRTSQIAWQKAISAIHDIPKSYNKSVRSLSLFIKPDNFQTHTIKDYTGGETKTVLNRLKQRLLRRDAIEERKPRIPRAGPACSCPDCGKSFYSPFYLRNHLKNSGDKEACAHCGSVYIRGKEIQEHLAAVHGETTVPCQSCPTLFTSDIRLKKHVLKAHKVGAWTCSDCGRSFPGKASLEVHTQMHTVRTCRACGCQFTNRGCYREHRAKCEPDALPNKKDLPRNKRANLRDPATFTCDHCGKTYFSRPQLKNHIIWIHMDVRPHQCQWCGKRFYTPARLAEHCVVHTRERKFGCDICGAKLVTKMAAIYHKRRHTGEKPYECTDCGEAFISASRRLEHAKRRHGKGVKLQCLQCSANFVRGHELKKHMEKMHRTQGTNLTPKTKLFINNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -