Basic Information

Insect: Acentria ephemerella
Gene Symbol: -
Assembly: GCA_943193655.1
Location: CALPDL010000078.1:241600-250035[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.31 21 6.1 4.7 1 21 149 169 149 170 0.95

2 13 0.0014 0.096 13.5 0.3 2 20 184 202 184 206 0.95

3 13 0.003 0.2 12.4 1.7 2 23 246 267 244 267 0.93

4 13 0.032 2.2 9.2 0.0 2 23 336 358 335 358 0.93

5 13 0.24 17 6.4 0.1 2 20 364 382 363 384 0.90

6 13 0.00022 0.015 16.0 1.8 1 23 392 415 392 415 0.97

7 13 1.3e-06 8.7e-05 23.0 2.6 1 23 436 458 436 458 0.99

8 13 2.6e-07 1.8e-05 25.2 2.8 1 23 463 485 463 485 0.99

9 13 2.5e-07 1.7e-05 25.2 2.3 3 23 498 518 496 518 0.96

10 13 2.5e-05 0.0017 18.9 3.2 1 23 524 546 524 546 0.99

11 13 7.8e-07 5.3e-05 23.7 2.5 2 23 553 574 552 574 0.96

12 13 1.3e-07 8.7e-06 26.2 1.5 1 23 580 602 580 602 0.99

13 13 0.001 0.069 13.9 0.6 1 23 608 630 608 630 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.31	21	6.1	4.7	1	21	149	169	149	170	0.95
2	13	0.0014	0.096	13.5	0.3	2	20	184	202	184	206	0.95
3	13	0.003	0.2	12.4	1.7	2	23	246	267	244	267	0.93
4	13	0.032	2.2	9.2	0.0	2	23	336	358	335	358	0.93
5	13	0.24	17	6.4	0.1	2	20	364	382	363	384	0.90
6	13	0.00022	0.015	16.0	1.8	1	23	392	415	392	415	0.97
7	13	1.3e-06	8.7e-05	23.0	2.6	1	23	436	458	436	458	0.99
8	13	2.6e-07	1.8e-05	25.2	2.8	1	23	463	485	463	485	0.99
9	13	2.5e-07	1.7e-05	25.2	2.3	3	23	498	518	496	518	0.96
10	13	2.5e-05	0.0017	18.9	3.2	1	23	524	546	524	546	0.99
11	13	7.8e-07	5.3e-05	23.7	2.5	2	23	553	574	552	574	0.96
12	13	1.3e-07	8.7e-06	26.2	1.5	1	23	580	602	580	602	0.99
13	13	0.001	0.069	13.9	0.6	1	23	608	630	608	630	0.98

Sequence Information

Coding Sequence: ATGGCTTCGTCGTCGTCTCGAGACATAAAAATTAAAATAGAAAATGTTTGCCGTACATGTCTATGTAAGGAAAATGATCTCCATTCTGTCTTTGATATATCTTTTGGTTCAGTTTCTCTTGACTCTATTATTGCAGAAACGACTGGCATTCAGATTGTTCAGAGTGATGAACTCCCATCTACAATATGTAACATGTGTAAGGAAAAAGCTGCAAGGGCTTATGAATTTAGGAAACGATCACAAGAGGCTAATTTAACTCTTATAAGTGTATACAAAAAAGAAAAAAATGAACCGTGTTTGCCAGAAAATGCAAGTGCACAGCAAACCAATATCAAAACTGAGGAACCCTCAGCTGAAGACAATGATTATGTAGATTGGATGGGAATAGATGACTTTAATGAATTTGACACTGTTAAAGATGAGCATGACGATTCACCACCACATTATCAATGTAAAAGTTGTGACTCAAGTTTTCATTCACATAAAAAATTTCAAGAACATATCACAAAAAAATGTTTAAAAGTTGAATTCGAAGACGCAGGTAGCAATTATTGCCCATTGTGCGGCACAAACTATTATGATGCAGTTAATTTAACTGCGCACATGTGGGAATGTCACGCTGATCTAATGGGACCAAAGAAACGAGGAAGACCTAAAAAGATATTAACAACTACCATATTAACAAAATTGTCTGAAAATGGTTTTCGTTTAAAAGCGATCTCTGTTGAAAAATGCGAGTGCATGATATGTAATGAGCAATTCCAAACCAAAGAAGATTTAGGACAGCACTTGATGAAGCATAAGGATACAAAAGTATTATGTTGTCTTTTGTGCAAGAAGATGTATCTAAAAAATAAACATTTTAATCTTCACACCTGTATCAACGATAAAGGAAATGTGAAAAAAGATGATGCGTCTATTCAGACTGATAATGGCAACAAAATCACACAGAATTATTTATCAGAAATTATAATAGAGGAACTTTTAGAACATAATGAGATTATGGTTTGTGAGGTATGCACGGCTGTCTATACGTCGGAGGCAGAGCTCATGACTCACAATGACACTGAACACCCGGAGCGTTCACTACGATGTAATCTATGTCTAAAGGTATTTGCCTCAGTGAAGTCAGCGGCACGCCATAGGAGCATTTGCAAGCAAATTGAAAGAAAACATAAATGCTCTACTTGTGGTCTTAAATTTGCTTATGAAATTTCGTTAAATAAACACATACTGAGATATCATGAAGGTCAGAGTGTATCTGTGAAGTTTATGGATACAAAAGCTAAAGAGGAAGAGAAGCAATATCAATGTGACACATGTAGCAAACAATTTTCCAGGAAGGAATTACTTGTCAAACATACGAGGACACATTCCGAGAAATTATATGAATGCGATGTATGTAAGAAGAAGTTTAATAGGAGTGATAATTTACGTTCACATAAAAGAACACATGATCCACGAGAGAAAACCAAAGCCAGCACTTGTCTTTGCCTCTATTGTGGCCGAAGCTTCAACAATTCATCCAACTTAATTGTTCACATGCGCCGGCACACTGGAGAAAAACCGTATAAATGTGATTTTTGCGGAAAAGGGTTTCCCAGGTCTTCAGACCTTCAATGTCATAGAAGATCACACACGGGCGAAAAACCTTGCGTTTGCAGAATTTGTGGTAAAGGTTTTTCACGAAGCAACAAACTGTCTCGTCACATGCGTGTACATACGGGATTGAAGCCTTATAAATGCACTTACTGTGAGAAGGCGTTCTCACAAAGTAACGATTTAACGTTACATATACGTCGTCACACAGGTGACAAACCTTATATTTGCGAAATCTGTGGAGACAGGTTTATCCAAGGTACAGCGCTACACAATCATAGACGAACTCATGGTCATTTTCCGCCATCTTCGGAAGTACCAGCACAGGAACAAGGATTATCGTATACCGTTCAAAATATAGCTCATCAAAATACAAACCAGTAG
Protein Sequence: MASSSSRDIKIKIENVCRTCLCKENDLHSVFDISFGSVSLDSIIAETTGIQIVQSDELPSTICNMCKEKAARAYEFRKRSQEANLTLISVYKKEKNEPCLPENASAQQTNIKTEEPSAEDNDYVDWMGIDDFNEFDTVKDEHDDSPPHYQCKSCDSSFHSHKKFQEHITKKCLKVEFEDAGSNYCPLCGTNYYDAVNLTAHMWECHADLMGPKKRGRPKKILTTTILTKLSENGFRLKAISVEKCECMICNEQFQTKEDLGQHLMKHKDTKVLCCLLCKKMYLKNKHFNLHTCINDKGNVKKDDASIQTDNGNKITQNYLSEIIIEELLEHNEIMVCEVCTAVYTSEAELMTHNDTEHPERSLRCNLCLKVFASVKSAARHRSICKQIERKHKCSTCGLKFAYEISLNKHILRYHEGQSVSVKFMDTKAKEEEKQYQCDTCSKQFSRKELLVKHTRTHSEKLYECDVCKKKFNRSDNLRSHKRTHDPREKTKASTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRICGKGFSRSNKLSRHMRVHTGLKPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYICEICGDRFIQGTALHNHRRTHGHFPPSSEVPAQEQGLSYTVQNIAHQNTNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961163;
90% Identity: -
80% Identity: -