Aeph017200.1
Basic Information
- Insect
- Acentria ephemerella
- Gene Symbol
- -
- Assembly
- GCA_943193655.1
- Location
- CALPDL010000128.1:2770889-2773258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.7e-06 0.00018 22.0 4.1 1 23 8 31 8 31 0.95 2 21 0.0026 0.18 12.6 0.8 2 23 37 59 36 59 0.94 3 21 1.7e-05 0.0012 19.5 0.2 2 23 68 90 68 90 0.97 4 21 4.2e-05 0.0029 18.3 2.9 2 23 99 121 98 121 0.94 5 21 0.00019 0.013 16.2 0.8 2 23 129 151 129 151 0.94 6 21 1.2e-06 8.5e-05 23.1 2.4 2 23 160 182 159 182 0.96 7 21 7.1e-08 4.9e-06 27.0 1.1 1 23 188 211 188 211 0.98 8 21 0.11 7.7 7.5 0.2 1 23 219 242 219 242 0.93 9 21 0.00058 0.039 14.7 0.7 1 23 263 286 263 286 0.97 10 21 6.3e-05 0.0043 17.7 1.9 1 23 313 336 313 336 0.98 11 21 0.29 20 6.2 1.1 2 22 344 364 343 364 0.95 12 21 0.079 5.4 7.9 2.0 2 23 373 395 373 395 0.94 13 21 0.0082 0.56 11.0 5.9 1 23 416 439 416 439 0.96 14 21 1.7e-05 0.0012 19.5 0.5 2 23 446 468 445 468 0.96 15 21 0.0001 0.0069 17.1 2.2 2 23 475 497 474 497 0.94 16 21 0.00026 0.018 15.8 2.2 1 23 503 526 503 526 0.98 17 21 0.17 12 6.9 7.1 2 23 534 556 534 556 0.95 18 21 9.3e-05 0.0064 17.2 0.1 1 23 563 586 563 586 0.98 19 21 0.0082 0.56 11.0 2.1 1 20 593 612 593 616 0.90 20 21 0.016 1.1 10.1 2.7 3 23 631 652 630 652 0.91 21 21 5.3 3.6e+02 2.2 0.4 1 12 702 713 702 719 0.83
Sequence Information
- Coding Sequence
- ATGTATCAAAATCTTTTAGACTATGTATGCGACTATTGCAGTCGTACATTTACAAGGAAGTATAATCTCCAGACACACATAGAAAATTGTCATTTAAATTCCACTTGCTGCTGTGAGATTTGTGAACAAACTTTTGGTAGTCCTGCTGGCCTGCAGCTCCACTTAGAGAGAGGGCACAACAGGTTTGGACAGCCGTATCCTGAGTGTGATCTCTGTGGAAGAGTGTTTACAAGGAAACAAAATATTGTATCACATATGATTACTGTACATTTTCAAGGCATTGGCCGGGAGATTCGTTGCAATTTATGTCACAAAACTTTTACTTCAGACAGAAATTTGAAGAGACATGTGAATCAAGTCCACAACCCAAATATTCAATATCCTACATGTGATAGTTGCAACAAAGTGTTTAAAGGAAAGCACTCTCTGATAGCCCACATACAAGCCATGCACAATGACGCAGAGAAAGATATAATCAAGTGTCATCTATGTGATAAAGTATATACAAATAGTAGAAACCTTAAAAGACATATTGAAATGTTTCATGGTGAAAAGGGAGAATTTAAATGCGATATTTGTCCTAAAGTGTACACGTCTAATCAAAGTTTGAGGCGGCATATCAGAACAACACATTATTCTGAAAATGCCGATGTGTATAATTGTGATTACTGTGCTAAAAGTATACAAGGACAAGAAAACTTAGATGCGCATATTTCTTTCTTTCATATACCTGATACACATTCACCGGATAATAGTGAGGTGACGTCATTGAAAAAAGTTTTCAATTACTCCTGTGAGTCATGTTCCAAATCATTTGAAGAAGAAAGCTTCCTCAGACAGCATGTCAAAATGGGTCATTCTTTCAAAACATTCTATAAATACTGTAAAAAATATTTACTGAAACAAGTCAATAAATATGAAACCAGACGCAATACTTATCGTTGCGAATTTTGTCATAACGCCTTTAGTAGCGTTTACGAGTTAAAAGATCATATGAGGATCAACCACGATAGAGAGTATTCGTTATCTACATGCAATGTATGCTTCAATAAGTTTTATAGTAAAGAAACTGTGACTGAACACAGGAAGACATGTTTACCACCAGAAAACGCGAATTCTTGCAGTCATTGTGATAAATTGTTTACTGTTATATCAAGTCTAGAATTTCATACCAGAATCTTTCACCCGCAAGCTCAAATAGCCGATTCCAACATATCATCAACAAATATTGATGACATTGAGAATTACAAATGTTCCCATTGCGACCGAATCTATTACAGTGATAGGTCATTAAAGCATCACGTTAAACTCAAACATACCACTGACGAGGCAATGGAGTGTGGGTACTGCGGTAAGATTTGCAGCAACAAATATTATCTCGCATCTCATATTAAAATAGTTCACACAAATGATTCCTGGTCGAAATGCGACTATTGTGAAAAACAGTTTAAATCTAAAAGGAATATCCGTCGGCATATAGAGTATACTCATCTGGGAATGCAAAGATACAAGTGTGTTGAATGTGAAACTCTGTTTAAAGAGAAAAGGAGTCTTCGGAAGCATGTTAGAACTAAGCATCCGAATTCTGTTGCCTTCCCGCAATGTCATATTTGCCATAAACGATTTGAATCCGCAAAATCATGTAAAATACATTTAAAACTGCTACATTCGTTTAATATGAATACATACCCCTGCGATTTGTGTTCGGTATCTTTTAGTTCCAACGAAGCATTGTCAATACATCTACAAACGAAACATTTAGCTGAGGACGAAATATATAAATGCGAAGAGTGTAATCTAGTCTTCAAAGGACAGGGGAAATTTGAGCAACACAACGACTTGTGCCATGTTAGTTTAGTTCCGAATATAAAGCAGAAAGTGTTGCCGCGTTGTATTATATGCATGAAGGATTTCAGCACAAGGAAAACTTTAAAAAGGCATATCAAGAAATTCCACGAAGACTTTGATGTGGATGAACTGGCCAACTTCGGTTCCAGACGCCGGATTTTCAACGTTGAATGCGAAGATTGCGTTAGAAATTTCAACGACGACTTCCATTTCGGTGTTTATCAGAAACTGAAGCATTTAAGGGACTCTGTTATCTTCAAATGCGAAACTTGTTCGGCATCTTACAATTCTATAGAGTATTTCGTACAACGACATAGAATGGTAAATAATGATTCGTGCAAAGGTAAAATGATACTTAGCGAACTATGTACCGCGGAGATGAGCGGCGATGAAGCTCCGTATACAGGATTCGGGTCGTTGCATGAATTGATGGAACCAGAAAGTACCACTAGTGACACGATAAAAGTTGAACCATTCGACGATTTGGTAGATAATATTAAGATGGAACCAGTGACTCCATAA
- Protein Sequence
- MYQNLLDYVCDYCSRTFTRKYNLQTHIENCHLNSTCCCEICEQTFGSPAGLQLHLERGHNRFGQPYPECDLCGRVFTRKQNIVSHMITVHFQGIGREIRCNLCHKTFTSDRNLKRHVNQVHNPNIQYPTCDSCNKVFKGKHSLIAHIQAMHNDAEKDIIKCHLCDKVYTNSRNLKRHIEMFHGEKGEFKCDICPKVYTSNQSLRRHIRTTHYSENADVYNCDYCAKSIQGQENLDAHISFFHIPDTHSPDNSEVTSLKKVFNYSCESCSKSFEEESFLRQHVKMGHSFKTFYKYCKKYLLKQVNKYETRRNTYRCEFCHNAFSSVYELKDHMRINHDREYSLSTCNVCFNKFYSKETVTEHRKTCLPPENANSCSHCDKLFTVISSLEFHTRIFHPQAQIADSNISSTNIDDIENYKCSHCDRIYYSDRSLKHHVKLKHTTDEAMECGYCGKICSNKYYLASHIKIVHTNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHVRTKHPNSVAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALSIHLQTKHLAEDEIYKCEECNLVFKGQGKFEQHNDLCHVSLVPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHEDFDVDELANFGSRRRIFNVECEDCVRNFNDDFHFGVYQKLKHLRDSVIFKCETCSASYNSIEYFVQRHRMVNNDSCKGKMILSELCTAEMSGDEAPYTGFGSLHELMEPESTTSDTIKVEPFDDLVDNIKMEPVTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006443;
- 90% Identity
- iTF_00006443;
- 80% Identity
- iTF_00006443;