Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0025 4.1 7.8 0.1 12 29 141 158 134 167 0.78

2 6 0.035 58 4.1 0.4 5 38 189 217 186 223 0.76

3 6 0.016 26 5.2 1.4 2 24 213 235 212 238 0.90

4 6 0.032 53 4.2 4.4 12 27 253 268 244 282 0.71

5 6 0.00068 1.1 9.6 4.5 2 33 272 303 268 312 0.82

6 6 0.0003 0.5 10.7 1.1 17 41 315 336 302 338 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0025	4.1	7.8	0.1	12	29	141	158	134	167	0.78
2	6	0.035	58	4.1	0.4	5	38	189	217	186	223	0.76
3	6	0.016	26	5.2	1.4	2	24	213	235	212	238	0.90
4	6	0.032	53	4.2	4.4	12	27	253	268	244	282	0.71
5	6	0.00068	1.1	9.6	4.5	2	33	272	303	268	312	0.82
6	6	0.0003	0.5	10.7	1.1	17	41	315	336	302	338	0.83

Coding Sequence: ATGAACTTTATTTTCTTACTTTCAGGAACACCAGAAAATATCGAAAGATTTCACAATCAGAAAAATCAATACCACTTCATTCAGGAGCTGAAGAAAGTGCTATCATTTACCAATGTATTGCCATTCAAAATAAAAGGGCTTAAATATTTTTGCCCTTATTGTTTGTTCAAAAAATACTGTTTCGAAGACCCGGAGTACTTGAGGGTACACGTGAGGAGCCACAAAAGAGATAGGGTTAAGAAATTAGATTCTATGTTCAAAACGTGTTACCGGAATGAAACTTTAAGGATTGACATCGACGCACTCCGCTGCACGGCTTGCGACATCTCCATTGAACACTGGGACGACACTTTCAAGCATTTAAAGGATCATCATGGTTTAGATCTTGAACAATGCCAGAAAAGATTAATCCCTTTTATACTTAAGAAAGATTTTATGCGTTGCGTCATATGCAATGAGAAGTTTTCTAACTTCCAAAGCTTAAATACTCATATGAATGGTCATTTCGCCAATTACATGTGCACAGATTGCGGCGACACTTTCTTAGATCGATACAGACTAAAACATCATAAAGAAATACATAGCTCTGACGACCTCACATGCGATGAATGTGGCAAAAAGTTTACCACGGAAAGAAACTTGAAAAGCCACACCGGAATAGTCCACAAGAAAATGAAAAATTACAAATGCTCTTACTGCTCAGAAAGATTCTATACGATCCTCCTGAGACATGAGCACGTACTCGAGATACACAAGGAAAAGATACGCGTCAACACTTGCGAGCATTGTGGGAAAACTTTCATCTGGAGGCACAAGTACTTTGCACACTTACGGACAGTACATTGCGATGATAAGAAGCACAAGTGTAGATATTGTGATATGGCATTCGTGTACAAACACCAAGTCAAAACACACGAGCAAAGACACACCGGCACGGGTGAATACTATTGCAATTATTGTGGAAAAAACTTTGTCGTGCCGAAAGAATTGAGGCGTCATATGAACACGCATGCGAAAGATATTATGTCGTCTGTGGTGAAAAAAACTTGA
Protein Sequence: MNFIFLLSGTPENIERFHNQKNQYHFIQELKKVLSFTNVLPFKIKGLKYFCPYCLFKKYCFEDPEYLRVHVRSHKRDRVKKLDSMFKTCYRNETLRIDIDALRCTACDISIEHWDDTFKHLKDHHGLDLEQCQKRLIPFILKKDFMRCVICNEKFSNFQSLNTHMNGHFANYMCTDCGDTFLDRYRLKHHKEIHSSDDLTCDECGKKFTTERNLKSHTGIVHKKMKNYKCSYCSERFYTILLRHEHVLEIHKEKIRVNTCEHCGKTFIWRHKYFAHLRTVHCDDKKHKCRYCDMAFVYKHQVKTHEQRHTGTGEYYCNYCGKNFVVPKELRRHMNTHAKDIMSSVVKKT

Sequence clustering based on sequence similarity using MMseqs2