Alag029710.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- -
- Assembly
- GCA_031841125.1
- Location
- CM063113.1:49691677-49702259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3 2.1e+02 3.7 0.1 1 13 32 44 32 45 0.89 2 15 3e-05 0.0048 18.3 2.1 2 23 129 151 129 151 0.96 3 15 0.00022 0.036 15.5 0.2 3 23 167 188 165 188 0.92 4 15 0.4 65 5.3 1.7 3 12 248 257 247 259 0.90 5 15 0.55 88 4.9 1.0 1 23 287 310 287 310 0.87 6 15 9.9e-06 0.0016 19.8 3.0 1 23 360 383 360 383 0.97 7 15 0.00037 0.06 14.8 0.1 2 23 405 427 404 427 0.95 8 15 0.034 5.5 8.7 0.5 1 23 435 458 435 458 0.90 9 15 4.9 7.9e+02 1.9 5.5 1 23 484 506 484 506 0.96 10 15 9.5e-06 0.0015 19.8 1.8 1 23 512 535 512 535 0.97 11 15 0.068 11 7.7 2.8 1 23 541 563 541 563 0.96 12 15 0.00078 0.13 13.8 0.7 1 23 569 591 569 591 0.96 13 15 3.6e-06 0.00058 21.2 2.6 1 23 597 619 597 619 0.97 14 15 0.00038 0.061 14.8 3.0 1 23 625 648 625 648 0.97 15 15 0.0017 0.28 12.7 3.4 1 23 654 676 654 676 0.98
Sequence Information
- Coding Sequence
- atggtaaaaagtaaaaaagctCGCCTGCCCGCCGCCGAGGCCGCGCAAGTAGCGACACGCAGCACCGCTAAGACCAGGAAAGCCGCCTCGCAGCACAAGTGCAGCGTGTGCAAAATACCGTTCGCGGATCCGGTCATCCGCGACTACCACGAGAAGGTCGCGCACACCGAGGACAATCTGAAGCCGGAGGCGCGTATTGTGACGCTGACACCGCTTCCCCGTACGCGAGCCGGTTCTCGGATGCCGACCGTGCGCCTCAAATCTGTGCGCATCAAATCGGAAGAAAAGGCTCAATGTATCGAAAACGTTAGCATAACCCCGTCCAGCGAAGACCCGCTCGTGGACCAACCGGCCCCAAAACAGGCTACTGACGTTCGCTTCAACGTCTGCAACTACTGCGGCTACCGCTGCAAACGCAAATCCGATGTCCGGCGCCACATCATCAGGGTGCACCTCGCCGATTCGAATCCACAATCGCACCCCGCCGATCTACTGTTCTGCGCCGTTTGCGGGCAGTCGTTCGATCAAAAGATCTCGTTGAGACGGCATGTTGTGCGCGCGCACTTCATGCAACCGGGTCTCAAGTGCGGCCAGGAGATGTCCAGAGGCTATTGCTGCGACGTGTGCGGCGAAAGCTATCTGGCGGTTAAGAGGATGCTGGCCCACCGGGACGTGCTGCATATCGACGCGCCGTCCATGACGTGGAAAACCCTATGCAGTTGCCTGCGCAAAGTGAATCCGTGTCCGCAGTGCGGTCGGTGCTTCGCCAGGGGCAAGTTTTCGGACGAACACGAGTGCGTGAAAGTGGACCCGCAGGTCGTCGACAGTATCGAGCGCGCGGTCAACGCGAAGCCGCGTTACCGGTGCGACCAGTGCTCATTATGTTTCGTGTGGAAGTTGGTGCTGCGGCAGCACCGCGAAGTCGCGCATCCTAACGCCGAGCCCATCAATTGGGAGGCGGTGCAGGCGACGGATATCGCGCGCTATTGCCCATCGTGTTACCTAGCGTTGGACGGCGACATCCAACTCGAGGACCATCAGTGCGTGAGCTCGGACATCGACTCGCGACCGCGCATGCACACGTGCGACATATGCGGCAGCAGTTACGTGCGCAAGTCAGACTACCAGCGGCACCAGCGTAGCAAGCACTCGGACCGGTTCCCCGAAGCCGGCGAGTCGGACAGCAGCTCGGCCAAGCGTAAGACCTACATCAGCTGCCCTTACTGCGATCAGACGTTCGGCACCCGCAACAGCGTGCTGGCGCATATTAAGGAGGCGCACGACATCGACACGGACTCGCCGTTCGTGTGCGTCCCCTGCAATAAGGTGTTCAAGCGGAAGGCGACCATGGACACGCACAACCAGGTGTACCATCCGAAGGAGGAGAACGCCGAGGAGACGAGCCAGATACTGAAGGACGCTGAGATCCTGCTGAACGGCGAGGCGGCCTTTCACTGTCACATATGCAACCGCAACATGCACAACCCGGTACGCTTCGTCGCCCACTACCGGCTGCACTTCGTCGAGCGCAAGTTCACGTGCGACCTGTGCGGCAAGCAGACGCGCACCCAGCACCAGCTGAACTCGCACATCAAGATCATCCATCTGAATATCCGCAAGTATGAGTGCGACCTGTGCGGCAAGGGCTTCCACGCGAAGCAGTCGTGCGAGGAGCACCGCCGCATACACACCGGCGAGCGGCCGTTCTCCTGCGAGATCTGCGGCAAGACGTTCATCGCCATGAACGCGCTGTTCACGCACAAGAAGTTCCACAACGACTTCTTCGCGCACCCGTGCTCGATGTGCGACAAGAAGTTCAAGGTGCGCCGCTCGCTGATCAACCACATTCGTACGCACACCGGCGAGCGGCCGTTCAAGTGTGAACTGTGTCCGAAGACGTTCAACAACTCGTCGCGCTTCTCATACCACAAGAAGGTGACCCACTCGGACGCCCGGCCCTTTTCGTGCGCGCAGTGCGGCAGCTGCTTCAAGGCGAACAAGTTTCTGATGCGCCACATGAAGCTGCACAAGGTGCGCTCGCACATCCAGTTTCGGCGGCGCAACAACCCGGCGTATTTCGCGGCCGTCGGGTCGAACGGCACCGCCAAAGGTGGGCAGAAGAGGCCAGCGGCTGAGCCGGCCGGCGAGAACGAAAAGATGGCGGTGATGAGCGGCGTTGAGTATAAGGACGAGGTCGGGGCTGTGGTGTGCACGCTGCAGGATACGTTTGGAGCCGAGTCGAGCGCTCGATTGAGTCGTAACAGCGAACACGTAGACGCTGCGGTCGATGTCGAAGAGTCCAAAGAGTTCTTCGGCGATTTCAAAGCAGCCGGAGGGCGCATTGATTTCGGCTCGGCGGAAGGTGGCGGCAGTGTCGGCGTTAATGTCAAGCATATTAGGCGTTTCAATAGGCTTGGGTTTCTGCAGTCAGAACTTCCAGCACTGTTGGGCGGTTATGAAGATGCTGCGGGCACTCTGTCAATGAGTGTTCCACAGTCTCGTCTTCCCCGCATTCGCAGCAGGGTGACAGGATCCTCCTCATTCGATACAAATAGGCGCGAAATACCCATGGCTACTCAGTGCTTGCGCAAGGTGGAAGTCTATGTATGGGATGCTCGTTTCCACTGTTGGGATTAG
- Protein Sequence
- MVKSKKARLPAAEAAQVATRSTAKTRKAASQHKCSVCKIPFADPVIRDYHEKVAHTEDNLKPEARIVTLTPLPRTRAGSRMPTVRLKSVRIKSEEKAQCIENVSITPSSEDPLVDQPAPKQATDVRFNVCNYCGYRCKRKSDVRRHIIRVHLADSNPQSHPADLLFCAVCGQSFDQKISLRRHVVRAHFMQPGLKCGQEMSRGYCCDVCGESYLAVKRMLAHRDVLHIDAPSMTWKTLCSCLRKVNPCPQCGRCFARGKFSDEHECVKVDPQVVDSIERAVNAKPRYRCDQCSLCFVWKLVLRQHREVAHPNAEPINWEAVQATDIARYCPSCYLALDGDIQLEDHQCVSSDIDSRPRMHTCDICGSSYVRKSDYQRHQRSKHSDRFPEAGESDSSSAKRKTYISCPYCDQTFGTRNSVLAHIKEAHDIDTDSPFVCVPCNKVFKRKATMDTHNQVYHPKEENAEETSQILKDAEILLNGEAAFHCHICNRNMHNPVRFVAHYRLHFVERKFTCDLCGKQTRTQHQLNSHIKIIHLNIRKYECDLCGKGFHAKQSCEEHRRIHTGERPFSCEICGKTFIAMNALFTHKKFHNDFFAHPCSMCDKKFKVRRSLINHIRTHTGERPFKCELCPKTFNNSSRFSYHKKVTHSDARPFSCAQCGSCFKANKFLMRHMKLHKVRSHIQFRRRNNPAYFAAVGSNGTAKGGQKRPAAEPAGENEKMAVMSGVEYKDEVGAVVCTLQDTFGAESSARLSRNSEHVDAAVDVEESKEFFGDFKAAGGRIDFGSAEGGGSVGVNVKHIRRFNRLGFLQSELPALLGGYEDAAGTLSMSVPQSRLPRIRSRVTGSSSFDTNRREIPMATQCLRKVEVYVWDARFHCWD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -