Alag027028.2
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- L
- Assembly
- GCA_031841125.1
- Location
- CM063113.1:3290232-3303342[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3 4.8e+02 2.6 1.8 14 23 22 31 16 31 0.91 2 24 1.7e-05 0.0027 19.1 0.2 1 23 37 59 37 59 0.98 3 24 6.7e-05 0.011 17.2 0.3 1 23 76 98 76 98 0.98 4 24 0.47 76 5.1 0.4 2 23 122 145 121 145 0.89 5 24 0.0058 0.94 11.1 0.6 1 23 196 219 196 219 0.91 6 24 5.5 8.8e+02 1.7 0.1 2 23 244 266 243 266 0.90 7 24 0.026 4.1 9.1 0.3 2 23 337 358 336 358 0.96 8 24 0.011 1.8 10.2 0.5 1 23 382 404 382 404 0.92 9 24 3.3e-05 0.0053 18.2 0.2 1 23 412 435 412 435 0.95 10 24 0.004 0.64 11.6 0.3 1 23 440 463 440 463 0.93 11 24 3.2 5.1e+02 2.5 0.4 1 11 470 480 470 496 0.69 12 24 0.011 1.7 10.2 0.4 2 23 516 537 515 537 0.97 13 24 0.0077 1.2 10.7 3.6 1 23 541 563 541 564 0.96 14 24 9.6 1.5e+03 1.0 1.9 3 23 614 636 612 637 0.84 15 24 0.067 11 7.7 0.5 3 23 705 727 704 727 0.91 16 24 0.00049 0.08 14.4 4.4 2 23 740 761 739 761 0.96 17 24 0.48 76 5.1 0.4 1 23 771 793 771 793 0.95 18 24 1.9 3e+02 3.2 0.8 2 23 801 822 800 822 0.96 19 24 0.0081 1.3 10.6 0.2 1 23 919 942 919 942 0.96 20 24 0.1 17 7.1 0.9 1 23 946 968 946 968 0.97 21 24 0.21 34 6.2 0.4 1 23 977 999 977 999 0.96 22 24 0.00023 0.036 15.5 0.2 1 23 1007 1029 1007 1029 0.97 23 24 0.42 68 5.2 4.9 1 23 1036 1058 1036 1058 0.95 24 24 0.026 4.2 9.0 1.9 1 23 1105 1128 1105 1128 0.95
Sequence Information
- Coding Sequence
- ATGAGTTGCGTAACCGACAGGCCGAAGGTGTTTGAGATCACGGTGTATCGATGTCATGGCACCGACCATTTGAAAATTCACATGAAAACGCACGACAATCAAAAACCATTCCAATGCACGGTGTGCAATCGCGGCTACAACACAGCGGCGGCGCTCACTTCACACATGCAGAACCACAAGCGATCTGCGGAGACCTCGTCGAACCCAGCCCCGCCGGGCACCACTTTCAAGTGTCTGCAATGCGCTGAAATATTCCGCAAGCCCGAAGAGCTACAGAACCACATGAACTCGCATCAGCCTTCAGACAACCCACCGGGCCCGAACAGTCGGTCAAAAACCTCCTCGTATCCCATGATCAGATTGACCTGTACTTATTGTACCAAAGATAATTTTTCAACCATGGATGCTTTACAATCCCACGTTCAGTCAGCTCATAAATCGATCGTGAACGGCGACCTGCACCGCGAGCTAGCCACCGGCCGCCAAAAGTCTCCGCCAGCACCGCCTGTTTCGGCGCCGAACCCGCAGCTGAACTCGGTGTCGCCGCTGCAGCTGGGCCAGCAGTCTTTCACCTCGCTTCCGTCCTACTTCTGCGAACTGTGTACCATGCGCTTCTCGTCCATGCAGGCGCTGCAGAAGCACACGACCGCAGTGCACGGTTTCTCTAGCAACACCTACAACAGCCTCAAATACCTAATGATGCCGGAGATGGCCAACAACGGTAAACTGTACTGCGTGTACTGCGCCATGCACTTCCTCACGCCAGCCTCGCTGGCCGAACACTACGTCATCTTCCACAGTCCGTACCATCTGCACTTACTGGGCCTGACACCACCCGAACAGATGAAGCCGACCGACCTGTCGGTGGCCCGCAAGCCGTCGCCGATCAAGCGCTCCATGGGCGACGAGCAAGTGTCGCCGAAGAAGAAGTACAAGATGAACGAGAACTCCAACTCCAGTTCGGCACCAACGTCCAACAATCACCGTTACGACTATCCGGGCCCCCTAATCTGTAATCAATGCCTGGCCTCGTTCACCGACTTCGAGTCTTTCCGCGGGCACATCAAGCTGCATATCGAAGAGACCAGCGGCGGATTGCTGGGCGGCGCCACGCCGCCGGAATGCAAACGCACACCCATCGAGTTCACATGTCCGCACTGCCGCAGCGTCTTCTCATCGTCCGAAGAGATCAGTCAACACGTGGTCGCGCACTTTCTAGCCACCGGCACGGCGTACAGCTGCGAGAACTGCCAGAAGCCGTTTGACAAGGCAGACGAGCTACAGAAGCACTTGATGGACATCCACGCGCACCATTTGTATAGCTGCTCAATTTGTAACGAGGTGTTCGACTCGAAAGTCACGATTCAGGTGCATTTCGCGTCCAGACATAGCAACGAAGCGAAGGTGTATCGCTGCACCGGCTGCCCGACTTCGAGTACCGTTTATCATACCGAATTGGAGTTCGCGACCCACGTGAAGAGCATTCACACGAACAATTCGGCGTTACTCACCACCTTCACGACTCACCACAATACCCAGGTGGTGCGATGCTTGATTTGTCATATGAGTTTTCCAACCGAGTTGGACATGCAGTTGCATTTGGCCACCCACGGGAAGCAGTTTCAGTGTACACTGTGTCCGCAGTCTTTCCACATCGAGTATCTGTTGGATAAGCATATGCAAAACCATCATAGCTCGCCGCAACTAAACGGCAACATTGACCACGATCCGGCCAGTCTCAAAGAGCCGTCACCAACCCAGTCGCCAGGCTCACGCTTCGAAAATCCGACGGTCAAGAAACCCGATAACGGAGACCCGAAATCCGGGAACTTCATTTGCTGTGATATCTGCGAGAAGAACGAATTCTCCAACGAAATGGAACTGTTGGCTCATAAAAAACTGCAACATCATAAGCTTCTATCTCCGGGAAAGCCTACGAATGAGTCAGGCGAGAACAGCGGTTCCGACGACCGCATTAAAGCGGCGCCAAAGCATAAGACAAATTCAACCTCTTCGTCGCCGACAATACGCCACGATGGGTTTAAGAAGGCGAATGACAGTTTTACCGGGGACAACAGCAGCGGCAACGGCTGCAATAACAATGTGAACAGCTGCGAGATTTGCGAGAAACGTGACTTCACCAGCGAATCCGAACTGCAGTCGCATAAAAAGCTGATCCATCAAGTGAAGCTACCGTCACCCGGAAAGGTGAGTCTGCACTGCGCCTACTGTAACGAGAACTGCAAGTCGAGGTCTGACCTCGAAAATCATATGAAAAGTCATTCGCAGAATGCCACATCGTCCGGCAAACACAAGTGTATCATTTGCGACGAGATGTGCCCTACCGCCGCCGTATTGGCCGAGCACAAGTTAACCCACTGCAAGGTGCTGTCCGGGAAAACCTGCATGCAATGCAAAGGCTCCATTACCACTGAGGAGCAATTCTACTCGCACATCCAGCAGCACAGTTCGGCTAACGGGAACGCCGTCACCAACAACAATACCGCCTCCGCTACCAACAACAACAGCAGTAACGGCAATGGGATGACGCCGCAACTCGTCCTGCCGACGGTGTGCGTCATCTGTCGCCAGACGCTGGTCTCGGAGATGGAGACACGCATGCACGCTCGATTCCACCTGCACCAGTCGGCTGACCTGGTGCGCTGCTCGGTCTGCTTCCAGATGTCCGAGCGACAGGATCTGATTGCCGGTATATGTCGCGAGTGTTACCAGCGGCACGGCAAGTCGTCACCGTTCCGATGTCCGGAGTGCCACATGAAGTTTGACAATGGCACGGCCATTGAAATCCATTTGGCGACTGTGCACAGAAAGAGCTACCAATGCATCAAATGCCAGgtgagtttcGACAACGAAAAGGAGATTCAGCATCACGTGGCCACGCATTTAATGATCGACGGACTCAACGGTCACGAGTGCAGGCTGTGTCGGTTGGTGCTGCCGACATCGCTACAATTGCAAACTCACCTTATCGAGCATACATTTGCCGGCTGTGCCACCTTTACTTGTTACTTGTGCGGGTCGGTGTTTACGACTGCCCAGGGTTTGCAGACGCACATACTCGAGCATGGCCTTTCGGAGCGCCCGTACGACTGTTCGCGATGTAAACAGAAGTTTTTCTTCACTTCAGAATTGGAGCATCATAGCTACATGCACCTCGAGGAGCTAGCTATAAGCGAAGGGCAGAACTATTACTTCAACCAAGAAAAGTCTGCCCATAAAGAGAAACCACCGACGCCGTATTCCGCTCACCCATTGGCGGAAAGCCAGTTCAACTCGAAACCGACGTCCAAGTATAGCTGTGCTGAGTGCAGTCTCGAGTTCAGACACGCCAACGATTTGTACGAGCACAAGACTCGGTTCCACGATCGATACATTCCAAATGGCGATCATAAGCAGCATACGTTCAACGGTGCCGACGGTGCGAATGGCACCGTACCGACCACAGTGGCCGAAAAATACGACGAGCAGAACGGGCCCGCGGTTGAGGTAAAAATCGAGTGCAAGACTCAGAATGAATGCGAATCCGAAGACGAACAGATCGACGTGGTAACGACCAAAGTTGAAGATGTTCCGGTCGAACAGCACATCAAAAGCGAGTAA
- Protein Sequence
- MSCVTDRPKVFEITVYRCHGTDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKRSAETSSNPAPPGTTFKCLQCAEIFRKPEELQNHMNSHQPSDNPPGPNSRSKTSSYPMIRLTCTYCTKDNFSTMDALQSHVQSAHKSIVNGDLHRELATGRQKSPPAPPVSAPNPQLNSVSPLQLGQQSFTSLPSYFCELCTMRFSSMQALQKHTTAVHGFSSNTYNSLKYLMMPEMANNGKLYCVYCAMHFLTPASLAEHYVIFHSPYHLHLLGLTPPEQMKPTDLSVARKPSPIKRSMGDEQVSPKKKYKMNENSNSSSAPTSNNHRYDYPGPLICNQCLASFTDFESFRGHIKLHIEETSGGLLGGATPPECKRTPIEFTCPHCRSVFSSSEEISQHVVAHFLATGTAYSCENCQKPFDKADELQKHLMDIHAHHLYSCSICNEVFDSKVTIQVHFASRHSNEAKVYRCTGCPTSSTVYHTELEFATHVKSIHTNNSALLTTFTTHHNTQVVRCLICHMSFPTELDMQLHLATHGKQFQCTLCPQSFHIEYLLDKHMQNHHSSPQLNGNIDHDPASLKEPSPTQSPGSRFENPTVKKPDNGDPKSGNFICCDICEKNEFSNEMELLAHKKLQHHKLLSPGKPTNESGENSGSDDRIKAAPKHKTNSTSSSPTIRHDGFKKANDSFTGDNSSGNGCNNNVNSCEICEKRDFTSESELQSHKKLIHQVKLPSPGKVSLHCAYCNENCKSRSDLENHMKSHSQNATSSGKHKCIICDEMCPTAAVLAEHKLTHCKVLSGKTCMQCKGSITTEEQFYSHIQQHSSANGNAVTNNNTASATNNNSSNGNGMTPQLVLPTVCVICRQTLVSEMETRMHARFHLHQSADLVRCSVCFQMSERQDLIAGICRECYQRHGKSSPFRCPECHMKFDNGTAIEIHLATVHRKSYQCIKCQVSFDNEKEIQHHVATHLMIDGLNGHECRLCRLVLPTSLQLQTHLIEHTFAGCATFTCYLCGSVFTTAQGLQTHILEHGLSERPYDCSRCKQKFFFTSELEHHSYMHLEELAISEGQNYYFNQEKSAHKEKPPTPYSAHPLAESQFNSKPTSKYSCAECSLEFRHANDLYEHKTRFHDRYIPNGDHKQHTFNGADGANGTVPTTVAEKYDEQNGPAVEVKIECKTQNECESEDEQIDVVTTKVEDVPVEQHIKSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -