Alag015854.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- B0310.2
- Assembly
- GCA_031841125.1
- Location
- CM063109.1:71162461-71163762[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0017 0.28 12.7 0.1 1 23 103 126 103 126 0.97 2 11 8.3e-05 0.013 16.9 3.2 1 23 129 151 129 151 0.97 3 11 0.017 2.7 9.7 2.3 3 23 159 180 158 180 0.98 4 11 3.1 5e+02 2.5 0.9 3 23 191 211 189 211 0.87 5 11 3.3e-06 0.00053 21.3 1.0 1 23 217 239 217 239 0.97 6 11 1.2e-05 0.0019 19.5 1.9 1 23 245 268 245 268 0.98 7 11 1.5e-05 0.0024 19.2 0.8 1 23 274 296 274 296 0.98 8 11 3.6e-06 0.00059 21.2 0.3 1 23 303 325 303 325 0.98 9 11 0.00026 0.041 15.3 0.2 1 23 331 353 331 353 0.93 10 11 2.4e-06 0.00039 21.7 1.2 1 23 359 381 359 381 0.99 11 11 8.2e-06 0.0013 20.1 0.8 1 23 388 411 388 411 0.93
Sequence Information
- Coding Sequence
- ATGTCGTCGAAGAAGGAAGATTCCGCCGATATGTCGACCGAAACCTTTTTGGATTTGATTCTGGTTAAAACGGAGCGCAAAGCCGACAAGCAATACTATGATCATCAACAGCCTCATCAATTTCAAGAAGCTAGATCAGAATCATCACCACCACCACCGGCATCGCCATTGCCACCACTTTCGCCGCcacaacaacagcaacaacaaGAACAACAAATAATAGCTTTACATCTTGGTGGTATTGTGCGAGAGCAGAATGAGCAGCCGCCGTCACCTTATGTTCGACTAGGTGAAGAGCGAGAAGCGTACACGTGTGCACAGTGCGGCGCGGAATgtaagaacgaacaagaactgGCGGAGCACGCGCGAGTCGAGCATAAAGCTCACAAATGTCCGTTGTGCAATAAAATATTTGCGCACAAGTACATGATGGAGAAGCACGTGTATGTGCACTCGGACAAGCGAGAGCACGGATGTTCGCAGTGCGCGATGTCCTTTAAGCGCGAATGCGATTTGCTAAGCCATGTGAAGCGGAGACACGCGACCAAAAGTAAAACCACGACATACGGGTGTGACAAGTGCGAGTACTCGTGCGGAAGCCGATTCGGTATCAAAATTCATAGTTTGGCGCATGACGGTTTGTCCGCCTATAACTGTGACGAGTGCGGTAAAGGATTCAATTCGAAAATGGATCTGCGCACGCACAAGAACAACCATATCGGCTTTAAGCCGTTCCAATGCGACGTCTGTGGTAACAAGTTCACGCGCGGCACCTACTTGAAGCAGCACCGGCGTACTATGCACGAGAATCCGCGTTCGTTCGAGTGCGCCGACTGCGGCCGCCGCTTTTCACTCAAGTCGACGATCAAAAATCATCTACTTCGGCATACAGGCGAAAATCGAAACTTCACGTGCGATATGTGCGGACGCAGGGTGTCTAGTCGGAACGCATTGATCAATCACCAACGTATTCACACCGGCGACAAGCGGTTCGCGTGCAGTATTTGCGGCAAAGCGTACGTCACCAAGTTGCAGGTGAAGAGACACGCGTATCTGCACACCGACAGTAAGCCGTACGAGTGCGACGTCTGCGGCAGACATTTGGCCACCAGTAGCAGTCTTTTTAAACATTTGCAAACGCACTGGCAGCATAGGTTACTCTATTCGTGTAACATCTGCTCCAAGACCTACGTGTCGAAGTATAAATTACGCGCTCACATCGTCAACAGTCATCGAACGGCGTACGTCAACGTTGACACCATTGGTGGCGGCGGATTGTCATCGACATTTTCTTGCGAATAG
- Protein Sequence
- MSSKKEDSADMSTETFLDLILVKTERKADKQYYDHQQPHQFQEARSESSPPPPASPLPPLSPPQQQQQQEQQIIALHLGGIVREQNEQPPSPYVRLGEEREAYTCAQCGAECKNEQELAEHARVEHKAHKCPLCNKIFAHKYMMEKHVYVHSDKREHGCSQCAMSFKRECDLLSHVKRRHATKSKTTTYGCDKCEYSCGSRFGIKIHSLAHDGLSAYNCDECGKGFNSKMDLRTHKNNHIGFKPFQCDVCGNKFTRGTYLKQHRRTMHENPRSFECADCGRRFSLKSTIKNHLLRHTGENRNFTCDMCGRRVSSRNALINHQRIHTGDKRFACSICGKAYVTKLQVKRHAYLHTDSKPYECDVCGRHLATSSSLFKHLQTHWQHRLLYSCNICSKTYVSKYKLRAHIVNSHRTAYVNVDTIGGGGLSSTFSCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -