Alag010834.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- -
- Assembly
- GCA_031841125.1
- Location
- CM063108.1:53542479-53575699[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0091 1.5 10.5 0.2 2 23 514 535 513 535 0.95 2 12 1.3e-05 0.0021 19.4 0.1 1 23 541 563 541 563 0.98 3 12 0.00094 0.15 13.6 1.2 1 23 569 591 569 591 0.91 4 12 9.1e-06 0.0015 19.9 2.1 1 23 597 619 597 619 0.98 5 12 2.4e-07 3.8e-05 24.9 1.0 1 23 625 647 625 647 0.99 6 12 6.8e-05 0.011 17.2 0.1 1 23 653 675 653 675 0.97 7 12 0.0009 0.15 13.6 0.2 2 23 682 703 681 703 0.95 8 12 2.7e-06 0.00043 21.6 3.2 1 23 710 732 710 733 0.95 9 12 0.00026 0.041 15.4 6.1 2 23 816 837 815 837 0.97 10 12 7.8e-05 0.013 17.0 0.6 3 23 845 865 843 865 0.96 11 12 8.4e-07 0.00013 23.2 2.9 1 23 871 893 871 893 0.98 12 12 0.052 8.4 8.1 1.2 1 19 902 920 902 921 0.96
Sequence Information
- Coding Sequence
- ATGGAGAacgtgataattttgaaaaatttcgactcGCTGTGTCGACTGTGTCTGGTGAGCGGCGTCGAGCTGATTAGCATATTCGGCGATTCTAATTTCGGCTTGCGGTACGGCGATGAGCCGTTATCGGCCAAGATATCGGCGTGCACTTCGCTCGAGAACCGCGTAGCTCCGTTGAAACAAGTTTCAGTGCCGAGACTTGAGCTCTGCGGTGCTGTACTCCCATCCAAATTGATGGTTCGAGTCCAAGGCATCCTAAGGATTGAGTTTGAAGCCATTCCCCTGTGGACAGACTCAGCAATAGTGGTTGCTTGGTTGACCAGGCCGCCAACCACGTGGAAGACGTTTATAGCCAACCGTGTAGCTAAAATCCGAAGTGAGACTAAACCTGGAATGTGGCGCCCCGTGCCAACTAAACAGAGCCCGGTCAACCTGGCCTCCCGTGGTGTCATGCCTGAGCAACTAGATGACGACTTTTGGTGGCAAGGACCCAAATTCTTACAACAGCCGATCTCTTACTGGCTACTCCGACGCGTGACTGAAGGAAGCGCCGCCGCGAAGGAAATTCGCCGTAACCATGCCTTCAATTTTCTAACCTTGAAAACTGACCGCATTTTTGAACGATTCTCGGATTTGTCTTACTTGCAACGGTATCATGATCTTGACGATTCAACCAACGAGACCATGATCCGCTCATGTTGGAAACACCTTACATACATGGTTGGCTGTTTCTGGCGACGTTGGTCTCATGAGTACGTTTCAACCCTACAGGAATGTCGCAAATGGCAGACTTGTAAGTCCAATGTTCAGGTGAATGATCTCGTCTTGGTCCACAGCGGAACGTTGCCCACCCAGTGGTCATTAGGACGAGTACTTGAAGTCCATCCAGGAGCCGACGGCCTAGTTCACGTGGTCAAGGTGAAAACCGGGAAAGGTGAACTTATGCGACCTCTCGAAGATGGCCAAACTCCCGGTCACCAATTGAGTACCACTGCTTGTATTTTTTCATCTGTGTGTTTAAATGTGTCAGAGGGCGACAGTCTGCCGAATTTCATCTGCAAAACATGTTCGATGAAAATCATTCGTGCCTTCGAATTTCGTCAGCAAGCCAAAAGATCCGACGAAATCTTAAGAAGATACGTTCAAGATAAGGAGTACAAGAAGAAACAAGAAACCGCCGAGAAACAATTACAACAGGTGTTATTCAACAATAAAAATGATAGTAACACAACTGAGGTGGTCGCTGAAGAGCTCGAGGTGGAACCATTGACGTACTGTGTGAAGTACGAGCCCGAggacgacgacgatgacgatAACTCAAATTTCATGGACAGCGACTGCGGCAGCGATGATAATGGCGAGCAGAATTTGGTTACCAGTGTCGATCCAGCTGCGTCTGTGCTGGAGGAGGACGACTCCGAGGAAGAACAATTGCCTACTCAGCCGATGATAGACCGGAGGCACGATTTTGAGCCGGCTTGGATGAATAACGGTAACGAAGAGAGCGAAAACGGAGATGTTGAGCAGGGCACCCAATGGATATGTCAGTATTGTAATTCGAATTTTCCAAACGAGGAGAAATTCCAACGACATGCTTTGATTCACACTTCGGAACCGCCATTCCCTTGCGACTACTGCGACGAGAGCTTTGAACTGAGAACCGATTTAAAAGCTCATTGGCGTGTGCATAGCGATGGCAATCCTCATATCTGTCAGATGTGTGGCAAGTCATTCCCCGATCGCATGTCTTACCTAAAGCATTCGGATCTGCACGACCAAGTAAAACCCTTCCGTTGTCCTGTCTGCCAAAAATCGTTCTGCTACGGATCGGATCTTCGAAAACATGCCATTACTCATACAGGGGTCAGACCTTACGTGTGTTCGGTATGCGGTAATTCTTTCACCCGAAGCACGAGTCTGAACAAACACTTACGCATGCACAACGGAAACCGACCGTTCTCGTGCTCCGCTTGCCCCAAAATTTTCGGTTCTAGAGGGGACCTCAAACGTCACCAAATTATTCATAGCGGGATCAAGCCGTGGATCTGTACGGTGTGTTCGGTGCCATTCAACCGCAAAGATAAACTCGTACGGCATGAGAAACTTCATTCCGGTGAGCCGCGACCATTCCAGTGTTACGAGTGTCCAACATCGTTCAGCCGGAAAGAGGATTTAACGAAACACATTCAGTTTCATCATTATAAACCTccaccaaatatGGAAAATGCATCATCAAATCGTACAGAAGAAGAAGCTATAGAAAACAGTACATTGGACCAGATTAGTAAATCCGACCTAGAACGGGGTAACCGAACTTTCCGAGCGCTTATTCGCGAAGCTTTCAGTGGAGGGCAGGCGAACGGCTGGAGCCAAGCGGTAGCCGCAGCTGCAGTCGTAGCCCCGGCCGCCAACGTGGCTGCTGAAAAGAAGTCGGAAAACGTGCTGAAATGCGATATATGCCATAAGAAGTTCTCTCAGAAGCACTCTCTCGACTCGCACAAGAAGATCCACACCGCTGTGAAACCGTACGGCTGCTCTATGTGCGAGAAGTCGTTTTACCGCAGACGCGAATTAACCAGACACGAAGCTGTGCACACGGGCTACAAGCCGTTCTCGTGCGGCGTTTGCGGCAAATGCTTCTCGCGAACCGATAAGCTGAATCGACATGTGCAGACGCACCAGTATAAGAGTATTTTTCGGAATCACAAGTGCGAAGCGTGTTCGCTGAACTTCCGTACAGAGCAGGAACTGCAGAAACATAAACCGCTGTGCAAGCCGGAAACGAAGGAGAGTAACGAGCTCTACCCGGAAGTGATTGTGAAGGCAGAGGAaatcgaagaagaaaatgagGATAAAGACGAGGAGAACATGGTGATGGAATTTGATTCCAGGGATACGTTGACGAAGCTAGGAAAGAATCCAGAAATACTGCTATTACCTATCAAGTAG
- Protein Sequence
- MENVIILKNFDSLCRLCLVSGVELISIFGDSNFGLRYGDEPLSAKISACTSLENRVAPLKQVSVPRLELCGAVLPSKLMVRVQGILRIEFEAIPLWTDSAIVVAWLTRPPTTWKTFIANRVAKIRSETKPGMWRPVPTKQSPVNLASRGVMPEQLDDDFWWQGPKFLQQPISYWLLRRVTEGSAAAKEIRRNHAFNFLTLKTDRIFERFSDLSYLQRYHDLDDSTNETMIRSCWKHLTYMVGCFWRRWSHEYVSTLQECRKWQTCKSNVQVNDLVLVHSGTLPTQWSLGRVLEVHPGADGLVHVVKVKTGKGELMRPLEDGQTPGHQLSTTACIFSSVCLNVSEGDSLPNFICKTCSMKIIRAFEFRQQAKRSDEILRRYVQDKEYKKKQETAEKQLQQVLFNNKNDSNTTEVVAEELEVEPLTYCVKYEPEDDDDDDNSNFMDSDCGSDDNGEQNLVTSVDPAASVLEEDDSEEEQLPTQPMIDRRHDFEPAWMNNGNEESENGDVEQGTQWICQYCNSNFPNEEKFQRHALIHTSEPPFPCDYCDESFELRTDLKAHWRVHSDGNPHICQMCGKSFPDRMSYLKHSDLHDQVKPFRCPVCQKSFCYGSDLRKHAITHTGVRPYVCSVCGNSFTRSTSLNKHLRMHNGNRPFSCSACPKIFGSRGDLKRHQIIHSGIKPWICTVCSVPFNRKDKLVRHEKLHSGEPRPFQCYECPTSFSRKEDLTKHIQFHHYKPPPNMENASSNRTEEEAIENSTLDQISKSDLERGNRTFRALIREAFSGGQANGWSQAVAAAAVVAPAANVAAEKKSENVLKCDICHKKFSQKHSLDSHKKIHTAVKPYGCSMCEKSFYRRRELTRHEAVHTGYKPFSCGVCGKCFSRTDKLNRHVQTHQYKSIFRNHKCEACSLNFRTEQELQKHKPLCKPETKESNELYPEVIVKAEEIEEENEDKDEENMVMEFDSRDTLTKLGKNPEILLLPIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -