Alag030389.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- -
- Assembly
- GCA_031841125.1
- Location
- CM063113.1:62355156-62365778[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0022 0.36 12.4 0.7 2 23 191 213 190 213 0.95 2 23 1.9e-05 0.0031 18.9 5.4 3 23 274 295 273 295 0.95 3 23 0.059 9.4 7.9 1.9 3 23 313 332 312 332 0.97 4 23 0.0004 0.064 14.7 0.3 2 23 339 361 338 361 0.95 5 23 5.8e-06 0.00093 20.5 1.4 1 23 367 390 367 390 0.97 6 23 0.00046 0.074 14.5 0.2 1 19 407 425 407 425 0.98 7 23 0.00018 0.028 15.9 2.0 1 23 443 466 443 466 0.97 8 23 4.6 7.3e+02 2.0 6.2 1 12 482 493 482 505 0.86 9 23 0.021 3.3 9.4 0.6 3 19 517 533 516 533 0.94 10 23 0.034 5.5 8.7 1.4 2 23 542 564 542 564 0.94 11 23 0.00018 0.028 15.9 1.3 1 23 570 593 570 593 0.95 12 23 0.0013 0.21 13.1 3.1 1 23 599 622 599 622 0.98 13 23 1.7e-06 0.00027 22.2 0.4 1 23 628 650 628 650 0.97 14 23 0.0026 0.42 12.2 5.3 3 23 735 755 734 755 0.97 15 23 0.00049 0.079 14.5 0.7 1 23 760 783 760 783 0.92 16 23 3.2e-05 0.0052 18.2 2.2 1 23 789 812 789 812 0.98 17 23 0.00023 0.036 15.5 1.4 1 23 842 865 842 865 0.96 18 23 0.001 0.16 13.5 2.8 1 23 871 894 871 894 0.97 19 23 2 3.2e+02 3.1 0.3 3 22 911 930 910 932 0.85 20 23 0.00013 0.021 16.3 0.5 1 23 936 959 936 959 0.95 21 23 0.00048 0.078 14.5 5.4 2 23 965 987 965 987 0.93 22 23 0.00024 0.039 15.4 3.9 1 23 993 1015 993 1015 0.99 23 23 5.2e-05 0.0084 17.5 1.6 1 23 1021 1043 1021 1043 0.97
Sequence Information
- Coding Sequence
- atgCACTTCAGTGATTTCCAAGTCACCGAATCCGATGCTCTTCCTGTGAAATTGTGCTCACAATGTGTAGCATCTTTATTAGCCTGGCACGAATTTTATGTCAGTTGCATCAACATCAATAAATGTTTCCATGCGGTCCAAGAAAAGTTACGGGGTAAAGGATCTGTTCAGCAGGAAAATGTTGTTCCGGCTAATGAAATAGCCCAACAGAAATCAGCGAATGAATCGGAAGGTGCTCCAGTTATTGAAGtgattgaaatcaaaatggaTGTTGATGACGAACCGGAAAATGACATTTACGAAGAAGTTCCGGAGTATGGCGATGAACATTTCGATATCGCGAATATCCCGATCAGTGAGGATGCCTCTGTAACTGTTGTTGATCATGATGAACGTAGTAATGAAGATTCTGTGAAGGAAGAAAAACTTGACACCGAAGAAATGGCGATTTTGGAGAATGATTTAAAGGTCACGACCTATGGTTTTGAACACCTTAATGAGAGTTCGAACACGGTCGGAAAACTGTCGTCAAGCAAACTAGAGAAAGTTAATAAACTACATAAGTCGACAGTTTGTCGCATATGTGGAAAACTGTACGTTACTAGGACCAGCTATCTGCGCCACTTGCTCAAGCAACACAGCAACCATGCAATGGCCAAACGCAAAACTCTTCCGATTAAGACGGGCGCTGGTGCTGTCAAGAGTGCACTCGGTCCGAAGAATACGACGACAAAAACAGCGACAACAGAGGACGAGGCGGTTGCAGCGACAACTTCACCCGAGCAGAACAAGGCGGCTGAACCCGAGAGTTGCGAAATATGTCATGTATGCGGCAAAATGTTCCGTCACAAATCGACTTACCGCAAGCATTTGCGCGACCAGCATTCGGATGAGCCTCGTACTGTGAAGCCGAAAACGAGTCGTTCCAGACGCATGTGCGACTTATGCGGCAAGATCTGCAGCGGCGGCTCGTTCAAAGAGCACATGAGGAAGCACACGAATCCGGAGTGCGTGACGTGCGAACACTGCGGCCAAGTGTTTTCGTTCGTATCCGTGTTGAAAAGTCACATCGCCGTGCGTCACTCGAGCGAACGTCCTTACCCGTGCACCCTTTGCGATAGCTCCTTCAAACGAGCTGACTATTTGCGCTCACACATGCGCTATAAACACGAACCTAAGCTGCTGAAAACGGaaacaaaaactaatgaaaatcaCCGATTTCGATGCGGTGATTGCAACGTGGGTTTTCGAACTAAAGCCAGTCTCGAAAGACATTGTAGCCAGAAACAAGGCGCCGAGGGCGACAATAACCGCTGCCCGACCGCTTTCCAGTGTAACTTGTGCGACTTGTCGTTCAAAAAGCGAAATTATCTGATTCTGCATAAGCGATATGTGCACGAGAAAAACCAACCATTCCGCATCAGCGAAGCATCGGTAGGACCTTACAAGTGCGACAAGTGTGACCGTCGATTTGCGTCCGTATGTGGACGTAATTATCACTGCAAACATACGCATAATTCGGTTTACGAGACCAAGTTTAACGAGATTTGTGATCATTGTGGGCTGACGTTCCGTAATAGAGTGTTCTATGCGAAGCACTGCGCAAAATTGCGAGAAAAACCGACATGTTACCTCTGCTGGAATGCTTTCGAAACGCATGACGAGTTGAAGGAACATATGCACGAAGTACATGTTGACGATTTACCATTCCTGTGCGATATGTGCCGCCGTCGTTTCGTTACGTTGAGACAGTTAAACGATCATATCCGATCAAGACACGCATTCATCAGGCCATTCAAATGTAACTACTGCGCGCACACGGCCGTACGTAAAGACTCGCTGGAAGTTCATATTCGCAGCTGTCATTTAGGAGAGAAACCGTATAAGTGTGATTTATGCGAGAAAGCTTTCGCGCAGTCTAGTGATCTTCGTAAGCACAGAGTAATACATACGAGAAATAAAACGCCGTGTACCTCCAAGACTGAACCCAAGTACAAAGTTGAAACCAAGGAAGAAATTCTTCCAGAGTTCGAAGTCCAGATTGAACCCGAATACGAGATTGTTGAACCCAAAACTTGTACGGATGCCCTTGTCGAGCAAACCACCTCTATCAACTCGACACATGCCAGTCCCAAGTCGGAACAACAGGATGTGTCTGTATCCTCGGGAGATGAGATGGTACAACGACGTCGGTTACGAATTTGTCATCTTTGTGGTAAACATTACACCACGGATAGCGGGTTTCGCCATCATATGGTAATGCATCGCGATCCTAGTTTTTCGTGTCACATGTGTGGTCGCGTATTTTGGGAGTCGCAGAACCTCAAGAAGCACTTAGCTGCTTTGCATTCTGAAGATCGACCGTTTCAATGTCACATGTGTGGCATGAAATATAAACGTAGAGACGTTTTACAAGAGCATATAAAACGTGTGCACGATGGCATTAAAAAACAGTGGAATGAGCAGATGATTAGGAAGTACCGTAGCAGTGGTAATACGAAGACAGAAGTGAAGAAAGATCGGTTCCAGTGTCCACACTGTAATAAGTGCATGGCTAGCAAGGGTTACTTAGAGGACCATATCAATGGAGCTCATGTAAAGGAACCCTTGTACAAATGCGATCAGTGTGCAATGACTTTCACTCGGAAAGCATCGTTCAGATATCATTTTAAAAGAGCACATGTTCAAAAGAAAAGGATACTAGAGCCAAGAGGCACATTCCTCCAAGACTGCGAATTTTGCGGTCTGCAGTTCCGTATTAAGAAATATTACGATCTACATGTAGCTGCCAAGCATTTAAATAAACATCCGTGCGAGCATTGCGGAGAAGTCTTCAACAACAAAGGCCAACGAATTGCGCACATAGACAGTGTACATGCCGATGAGATAGCTAAATGTCAGATCTGTCATAAGACATTCCCAGAAGCTGAGCACCTAAAACGGCATATTTACCTATGTCACACGGAACGTAAACCGTACGAATGCCATACCTGTGGTCATAAGGCAAATAAAAAGTCAACCTTAGCTGTACACATGCGTCGGCATACCGGTGAAAAACCGTATCAATGCGACCGTTGTCCGAGGCGGTTTTCACAATCTGTAGACTACCGAAAGCACAGGGCAAATCATTTCAAGCGTAGAACCGAGGAACACGATGCGGATATGAAGAAAACTGTCGAATGTGCGTTGGAAACTGAAGAAATCGGTCTAAGTATAGAATGCGTGGGTGACGGTGAAAAGTTAGATTTTGAAGCTATTAAAACAGGAAACGTTCATTTTATGTAG
- Protein Sequence
- MHFSDFQVTESDALPVKLCSQCVASLLAWHEFYVSCININKCFHAVQEKLRGKGSVQQENVVPANEIAQQKSANESEGAPVIEVIEIKMDVDDEPENDIYEEVPEYGDEHFDIANIPISEDASVTVVDHDERSNEDSVKEEKLDTEEMAILENDLKVTTYGFEHLNESSNTVGKLSSSKLEKVNKLHKSTVCRICGKLYVTRTSYLRHLLKQHSNHAMAKRKTLPIKTGAGAVKSALGPKNTTTKTATTEDEAVAATTSPEQNKAAEPESCEICHVCGKMFRHKSTYRKHLRDQHSDEPRTVKPKTSRSRRMCDLCGKICSGGSFKEHMRKHTNPECVTCEHCGQVFSFVSVLKSHIAVRHSSERPYPCTLCDSSFKRADYLRSHMRYKHEPKLLKTETKTNENHRFRCGDCNVGFRTKASLERHCSQKQGAEGDNNRCPTAFQCNLCDLSFKKRNYLILHKRYVHEKNQPFRISEASVGPYKCDKCDRRFASVCGRNYHCKHTHNSVYETKFNEICDHCGLTFRNRVFYAKHCAKLREKPTCYLCWNAFETHDELKEHMHEVHVDDLPFLCDMCRRRFVTLRQLNDHIRSRHAFIRPFKCNYCAHTAVRKDSLEVHIRSCHLGEKPYKCDLCEKAFAQSSDLRKHRVIHTRNKTPCTSKTEPKYKVETKEEILPEFEVQIEPEYEIVEPKTCTDALVEQTTSINSTHASPKSEQQDVSVSSGDEMVQRRRLRICHLCGKHYTTDSGFRHHMVMHRDPSFSCHMCGRVFWESQNLKKHLAALHSEDRPFQCHMCGMKYKRRDVLQEHIKRVHDGIKKQWNEQMIRKYRSSGNTKTEVKKDRFQCPHCNKCMASKGYLEDHINGAHVKEPLYKCDQCAMTFTRKASFRYHFKRAHVQKKRILEPRGTFLQDCEFCGLQFRIKKYYDLHVAAKHLNKHPCEHCGEVFNNKGQRIAHIDSVHADEIAKCQICHKTFPEAEHLKRHIYLCHTERKPYECHTCGHKANKKSTLAVHMRRHTGEKPYQCDRCPRRFSQSVDYRKHRANHFKRRTEEHDADMKKTVECALETEEIGLSIECVGDGEKLDFEAIKTGNVHFM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -