Alag028749.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acanthococcus lagerstroemiae
Gene Symbol
-
Assembly
GCA_031841125.1
Location
CM063113.1:32882735-32891714[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.021 3.3 9.4 1.3 3 23 2 22 1 22 0.95
2 24 4.8e-05 0.0077 17.6 2.1 1 23 28 50 28 50 0.97
3 24 0.0029 0.46 12.0 0.5 1 20 56 75 56 78 0.91
4 24 0.00034 0.055 15.0 4.4 1 23 84 106 84 106 0.98
5 24 9.3e-06 0.0015 19.9 3.0 1 23 112 134 112 134 0.98
6 24 8.2e-05 0.013 16.9 3.3 1 23 140 162 140 162 0.99
7 24 9.6e-05 0.015 16.7 0.4 1 23 240 262 240 262 0.98
8 24 7.6e-05 0.012 17.0 0.7 1 23 268 290 268 290 0.98
9 24 9.1e-05 0.015 16.8 5.2 1 23 296 318 296 318 0.98
10 24 0.16 25 6.6 3.1 1 23 324 346 324 346 0.97
11 24 8.5e-07 0.00014 23.1 1.9 1 23 352 374 352 374 0.99
12 24 0.00016 0.026 16.0 0.7 1 23 380 403 380 403 0.96
13 24 0.00043 0.069 14.6 4.2 1 23 736 758 736 758 0.99
14 24 0.00032 0.052 15.0 11.4 1 23 764 787 764 787 0.97
15 24 0.00039 0.063 14.8 0.2 1 23 793 815 793 815 0.96
16 24 3.4e-05 0.0054 18.1 1.8 1 23 821 843 821 843 0.99
17 24 0.00092 0.15 13.6 0.5 1 23 849 871 849 871 0.98
18 24 0.052 8.3 8.1 1.5 1 23 876 898 876 898 0.96
19 24 0.093 15 7.3 8.6 1 23 904 926 904 926 0.97
20 24 5.3e-05 0.0086 17.5 1.5 2 23 939 960 938 960 0.97
21 24 6.6e-05 0.011 17.2 0.2 1 23 966 988 966 988 0.97
22 24 0.011 1.8 10.2 4.6 1 23 994 1016 994 1016 0.93
23 24 0.0012 0.19 13.2 4.7 1 23 1022 1045 1022 1045 0.96
24 24 0.0013 0.21 13.2 0.3 1 23 1050 1074 1050 1074 0.90

Sequence Information

Coding Sequence
ATGTGCGATCTTTGTGGTGCGACTTTCAAGATCAAAAGGTGTCTTCAAAGTCACGAGGCTTCTCACTCAGACGTCAAACCTTTTGCCTGCGGCATCTGCAACGCCGCCTTTAAGCACAGGCACAACCTGTTGAAACACGAACGCATTCACACCAACTACAAACCGTATCTATGCACGTTCTGTGGCTCACGGTTCAGCTTGAAGGATACGCTAACACGTCACATTCCTATTCACACCGGCGAGAAAAAGTACAAATGCGATTTCTGCGACGCCACTTTCATTCAAAAGTTCCATTTGCATTCGCATGTACGCGGGCACACCGGAGAGAAACCTTATAAGTGCGAGTTTTGCGACGAGAAGTACACGAATAATACGTCGCTACGAAACCACATGAAATACCACACGATCGACAAGCCATTCAAATGTCGTATCTGTAGCGAATGCTTCAGGTCGAAGTTGGCACTATACGACCATATCCGAACACACGTACCCGAAGGTCAAAACGAAGAGCCGCAAGATCAGTCAGCGTCATTAGAGGCGTTACAGGATAGGTTAAATGGTATCAAACAGATGTTAGGGTTACCAGTGGGGGACCAAGCTGAGCCGACGAAGaatctgGATGCGAATGATGAAAGGATTCTCAATACATACGCAAataaaattggttccaaaagGAAGTTGTCAGAAGGAGGTTCGAAAAGCGCATATGTTAAGCCTTTCAAATGTGACATTTGCAGTGTTTCATTCAGAGGAGAAGACAGTCTCCTGAGACATAAGCGGGCTCACATCGAAGAGGGAATTTTCGAGTGCTCCATCTGCGGCTATCAATTCACACGCCGCATTCGGTTCATATTACACTTGCGCGTGCACTCGAACGCGAAACCGTTTACGTGCGAGCATTGCAACGCCAGTTTTACTGTCAAGTGCTCGTTGCGGCGACATATTCTGCGGCACGTGGGCAAGGCTCCATACAAGTGTAGATTCTGTAAAGCGAAGATCTACCAGAAAAACCATTTGATGGTGCATGAGCGTGGGCACACCGGCGAGAAACCGTATAAGTGCGACCAGTGTGACAAACGCTTCGTGTCCAAAGGCAATTGGCGTTATCATTTGCGCACCCACACCGGGGAGAAACCGTTCAAGTGTGGTTTATGTGACGAGCAATACAAAACTAGGTTCGCGTTGAATGTGCATATTCGTGATAAACATCCTACCAGCGAAGACGATACGTGCTATGAGCGTAAGGATTTTGAAAGCATCGTTGTCCAGCCTTCGCCCCCAGATGCTGAAAAAGATATTACGGATAAGGAGAAAGAGCCTGTGTTAGATGCCCAGGAGAAACAAACAGAACATGGACTCGGCGATGAGAACTCGGCAATTAAACCAACACCCGTGCAGGATGTCTCTGTAAAAGCGGAAGTAAAAACGAAGACCGATTGTGATAGTCATTCGGATGACAGTTCCAATGATGATTTCTGGgcATGTACTAAGGATGATGATTCTGACAACAATAACTCGACGGTAGGATCTGAGATGAATGAACCCTCGAAAACTCGCCTTACTAGAATCGGAACAAGAAGTGCGAAGACACAAGACAGAACCACATCTTCTGTAAATGATACAACCAAGgtATGTTTAACGGACAAATTTGATGACGATAGTTTAACGGCAAACTCGGTAATCAACGAACCTCCGAAGAAAAGTCGCCTTGTCCGAACCAGAATAAAAATGGCCGGGAAACGAAGCGGGGCCACATCTTCTACAAATAAGAGAATTAAGGCCTTTTCTGAAGAGGATGAATCCGACGAAACTTGTTCGACGGCGAGCTCTGACGTATATGAACCTCAGAAGAAACGTCGCCCTGTTAGAATCGGAGCAAGAACTACCAAAACACGGGGCAGCGCCACCTCTTCTGTGAATGACTCACTGGAGATGAAGGTAGAACAAGAATCTACAGATAATGATTATCATACTACAAAGATACAGGTCAAGAATTTGAATAGTACTCTActgaagaaacagaaaaagtcgaataaaAGCACAAAGAAAACAGTTCCAAAAAAACGTGGACGTCCAAAGAAAAATCAGTATTCACCTAAAAAAGAAACCGAATGTTATACACAGAAGGCTGCTAACAGCGTAACGAAAAATCAGGAGGATGATCTCAATTCCGGCGATTCTGATGGTGGTGGCACTGACCGTCCTTATAAGTGTCGCTTATGCGACGCCACGTTCAGAGTTAAAAAATGCCTTACCAGTCATCAGCTGACGCATACCGAGGAGAAGATGCATACTTGCGAGCACTGCGGCCACAGTTTCAAGCACCGTCACAACCTGTTGAAGCATGTGCGGGTGAAACACGACAAAGAACGACGTTTTCTGTGCAACATGTGCGGCGCTAAATTCGGTCTGAAAGACGTGCTGATACGTCACATGAACACGCATACCGGCTACAAGCCATTCAAATGCGACTACTGCGATGCACGTTTCACCACGCAGTATCAGACGACGATACATGTGCGGTCGCACACCGGCGAGAAACCGTTCAAATGTGACCAGTGCGACGGCGCCTTCGTTTCGCGAACGCTGTTGCGGTACCACGAGCGCGAGCACACGGACGAACGGTTCACGTGCTTGATCTGCGGAACGCATTTCCTAACGCTGCAGCTGCTGGAGAACCACAAGCTGAACCACGCCAAGGTGCGGCCTTATAAGTGCAGTCTGTGCAACACGCATTTCAAGCACGAAAATCACATGCGCATGCACGAGAAGTTGCATGCGGTTGGTGTGGGTGCTGATGGTGAGAAGCAAAACCAGTGCAGCGAGTGCGGCCAACACTTTATGAACGAGCGCAATCTGCGCGAGCATATGTCCGTTCATAGCGACGAGCGGCCGTACATGTGCGACGTGTGCGGGGCCGACTTCAGGCAGAGGATAAGCTTAAAAAGACACGCGCTGAGTCATTCGAATGAGCGACCTTATCAGTGCGACCAGTGCGACAAAAGATTCAAATGCAAGAAGACGTTGAACGAGCACCAGCCGACGCACTCGGGGATGAAGCAGTTTCAGTGTCAGTTGTGCAGCGCCACGTTTAAGCAGCAGCGATATCTGAAGCAACACGAACGACATACGCATAACCAGGTGCCGTTTGCCTGCACAGTGTGTCCGGCCGAGTTTAAGTACGAGAATACGCTGAAGAAGCATATTCTGAAGTATGGTCACGAGAAATGA
Protein Sequence
MCDLCGATFKIKRCLQSHEASHSDVKPFACGICNAAFKHRHNLLKHERIHTNYKPYLCTFCGSRFSLKDTLTRHIPIHTGEKKYKCDFCDATFIQKFHLHSHVRGHTGEKPYKCEFCDEKYTNNTSLRNHMKYHTIDKPFKCRICSECFRSKLALYDHIRTHVPEGQNEEPQDQSASLEALQDRLNGIKQMLGLPVGDQAEPTKNLDANDERILNTYANKIGSKRKLSEGGSKSAYVKPFKCDICSVSFRGEDSLLRHKRAHIEEGIFECSICGYQFTRRIRFILHLRVHSNAKPFTCEHCNASFTVKCSLRRHILRHVGKAPYKCRFCKAKIYQKNHLMVHERGHTGEKPYKCDQCDKRFVSKGNWRYHLRTHTGEKPFKCGLCDEQYKTRFALNVHIRDKHPTSEDDTCYERKDFESIVVQPSPPDAEKDITDKEKEPVLDAQEKQTEHGLGDENSAIKPTPVQDVSVKAEVKTKTDCDSHSDDSSNDDFWACTKDDDSDNNNSTVGSEMNEPSKTRLTRIGTRSAKTQDRTTSSVNDTTKVCLTDKFDDDSLTANSVINEPPKKSRLVRTRIKMAGKRSGATSSTNKRIKAFSEEDESDETCSTASSDVYEPQKKRRPVRIGARTTKTRGSATSSVNDSLEMKVEQESTDNDYHTTKIQVKNLNSTLLKKQKKSNKSTKKTVPKKRGRPKKNQYSPKKETECYTQKAANSVTKNQEDDLNSGDSDGGGTDRPYKCRLCDATFRVKKCLTSHQLTHTEEKMHTCEHCGHSFKHRHNLLKHVRVKHDKERRFLCNMCGAKFGLKDVLIRHMNTHTGYKPFKCDYCDARFTTQYQTTIHVRSHTGEKPFKCDQCDGAFVSRTLLRYHEREHTDERFTCLICGTHFLTLQLLENHKLNHAKVRPYKCSLCNTHFKHENHMRMHEKLHAVGVGADGEKQNQCSECGQHFMNERNLREHMSVHSDERPYMCDVCGADFRQRISLKRHALSHSNERPYQCDQCDKRFKCKKTLNEHQPTHSGMKQFQCQLCSATFKQQRYLKQHERHTHNQVPFACTVCPAEFKYENTLKKHILKYGHEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-