Alag003869.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- ZNF236
- Assembly
- GCA_031841125.1
- Location
- CM063106.1:78544817-78563141[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0053 0.86 11.2 4.3 1 23 223 245 223 245 0.96 2 29 0.05 8 8.1 1.0 1 23 250 272 250 272 0.96 3 29 9.1e-05 0.015 16.8 0.5 3 23 279 301 277 301 0.95 4 29 0.00085 0.14 13.7 0.1 2 21 308 327 307 328 0.93 5 29 0.0099 1.6 10.3 1.3 1 23 345 367 345 367 0.97 6 29 0.0028 0.45 12.1 0.9 2 23 394 415 394 415 0.97 7 29 2.4e-06 0.00039 21.7 1.8 1 23 421 443 421 443 0.98 8 29 0.00074 0.12 13.9 2.2 1 23 449 472 449 472 0.95 9 29 0.0089 1.4 10.5 3.7 1 23 482 505 482 505 0.97 10 29 2.2e-05 0.0036 18.7 0.7 1 23 597 620 597 620 0.95 11 29 0.056 9 8.0 0.6 1 21 691 711 691 712 0.95 12 29 6.7e-05 0.011 17.2 4.1 1 23 719 741 719 741 0.98 13 29 8e-05 0.013 16.9 0.8 1 23 747 769 747 769 0.97 14 29 5.3 8.4e+02 1.8 0.4 1 16 776 790 776 796 0.76 15 29 0.00065 0.1 14.1 3.5 1 23 837 859 837 859 0.96 16 29 1.7 2.7e+02 3.4 0.5 3 23 864 884 863 884 0.94 17 29 0.0013 0.2 13.2 2.1 2 23 893 914 892 914 0.96 18 29 0.00016 0.026 16.0 2.3 2 23 926 948 925 948 0.97 19 29 0.027 4.4 9.0 0.6 1 20 1120 1139 1120 1141 0.95 20 29 0.00094 0.15 13.6 1.3 1 23 1158 1180 1158 1180 0.98 21 29 1.2 2e+02 3.8 0.4 2 23 1187 1208 1186 1208 0.92 22 29 0.057 9.2 8.0 0.2 1 23 1214 1237 1214 1237 0.93 23 29 0.00017 0.028 15.9 2.8 2 23 1330 1351 1330 1351 0.98 24 29 0.042 6.7 8.4 7.5 1 23 1357 1379 1357 1379 0.97 25 29 4.2e-05 0.0067 17.8 1.2 3 23 1387 1407 1385 1407 0.97 26 29 0.00057 0.091 14.3 5.0 1 23 1413 1435 1413 1435 0.99 27 29 3.2e-07 5.1e-05 24.5 0.9 1 23 1504 1526 1504 1526 0.97 28 29 5.5e-06 0.00088 20.6 1.6 1 23 1532 1554 1532 1554 0.98 29 29 4.2e-05 0.0067 17.8 0.9 3 23 1562 1583 1560 1583 0.92
Sequence Information
- Coding Sequence
- ATGGACAACGACCAGAGTATCACTTCGGATATTTGCGCTATTACGGGAAACAATCTAGAAGCTGTTCTGTTTCCGGATTACAACAGTCATGAAAGTATGATCGTAACTTCAGATGGAATTAGTAATCTCAACTCTCTTGAAGGAGCTCTCTGCTATGATGAAGCCACTAATGAATTCGTCTACGTAAATATGATTCAGTCGAATCTAAATGGAGCAGAATCCTTGTCGGCGGTTTCTCAATCCGTGTTTTCAGCGTTAGGTGGCTCTTCAACTTCGTTGGCTGATTTATCGACGTTTGGTGATGGAGGCCAGGTAATGTTGTTGACAAATGGTTCGATAGTAGTCCCTAATGATGAAGATAATATGATGATCGAGAACTCGAACCCGTTTGTTCTTGAGCTCGTTCATGACCCACCTGATTCTGTCAAAGTAACcgattcgaatccaaaatcGAGTTCCAAAGTGCCGGACGAAGTAATACGTATTGAATTCGTAGAAATCGGAAAACCTGCGAAATCTGATTTGTCatcaaaaaggggtggaacCTCGGAtaagaacgaaaatgaagaacCTTTTGAAAGCAGTGTTTCAAAAAACCAGAATCCAGTTGAGATAGTTGATCTTGATGAAGAATTGTTGATTGGGAATCAGAAATCGGGAACACGTTACCATTGTAAGTTATGTTCCAAGAAATTTTCGCAGTTGAAAGAATATCGAATGCATTTACTGGATCATAAGGATAAAATGCATAAGTGTAGCTACTGCGCAAATTCATTTAATAAAATCaaaaatttgattcttcATGAAGCGATACATAATCCTATTGATACAATGTGTCCTTTGGCGAattgtcaaaaaaaatttaaaagactGGCTAGTTTGAAAGCTCATATAAAACtacatgaagaagaagaaacgttAACGTGTCCCGAGTGCGGGGAAGAATTCAGAAATCAGTTGTATTTGGAATTACATTATAAGTATCAGCCTCAGTGCCGAGCGTCGACAGCTGAGCGAATCAGTGTCAAGTCATTCAGCTGTAAATTATGTAATCGCAAATTCCAAGATATGAACGCCCTCGCATCCCATAAAAAGGAACACGAAAAGATTAAGAAAGCCTTAGCTGCAAAAAACCACAGAAAAAGACCTGTTCCTTCGGTGCCTTCTTCGCGAATTAATCGTTGTAAAGAGTGTACCAAGTGGTTCCTTAAACCGAGTCAGCTTATTCGACATATGAGGATACATACCGGAGAGCGTCCTTTTGAATGTACGGAATGTCATAAAGCCTTCAACCAAGCaaactcattaaaaattcatatgCTGAAGCACACTGGAGACCGACCTTATTTGTGTCAGTTCTGTCACTCTGGTTTCAGTCAACGAGGTAATCTTCGACAGCATATCAACAGGGTTCACTCAATCCCGAAGGTCGAAGAACACGTGTACGAGTGTTCCGAATGCCCGTGCATATTCAAGAAAATGTGCAGTTTGAATGCTCATCGTAATCGAGTCCATCAGAAGCGATATTACATGCCTCTGAACCAGGAGAAATCGCCGCCGCTGACTACGTCGAGCATTCATGCGAAATCGCTCCCTGTTCTCACATTCCGAACTGACCAACAGCCTGGGAACTCTACTAATCTCAATAAtgATAACGATAGCAATGTTGATGGAGCAGCACTGAATCAAGTTGATCAAAGGAAACATTATCCCCAGAAATCTTCATTTCCGGATTTACTAACCGATAATAGTTCAGTTGGATCAAATGCGAAAACAGGAGAATTCGAGTACCGGTGTCCTGAATGCCCGTATGTTTTCCAGAAGTTGAGCAATCTGAACGCTCATTTACATCAAGTCCACCTACAGCAACGGCCGCATTCTCCCGCAGGTGAAACGTCCGAGCATTCGATCACTATTGAAAATGGACTAGACGatgtggaagaagaagaTTTCGACCAATTATTGCAAAAACAAACGGCGGTGAACACAATTACGATATCGGTGGATAAGGGTAACGGAGAGTTGTGGAATCAGAAAGTGTTTATTACGAAGAAACAAAACACGCGTCATTATCAGTGCTCACACTGCCCGAAACAGAGTAACAAACTGAATGAAATTATCAGGCACTTGAAGCTGAACATGATGGGAAAACTATTCAAGTGCGATTACTGTACGAAAACCTTCTCGCAGCATTCAGCATTCTTAACTCATTTAACCGTACACGCAACAGCGAAAATTTACGAATGTTCGGTTTGCCGACAAAGTTTCTCAAATCAGGTTGAGCTAAAAATTCATTCAAAAAATCACACCAAAGCGCAGAATGATTATATGTGTATGATCTGCTTGAAGTCTTACTCGCCGAACGATCTACCCAATCATCAATGCTTACCCGGTGAGCAAGTCGGAGAAGATAATGCTGAACTGCGAATCTCCCAGGATCGAAAAAGTCTGCCTGAAAGTACCAATGTGCCAAGAATTCACGACAAAATAAGTTTAATACTGCCACCATACGACTGCCGGTATTGCGACGTCACGTTCAGTAGTTACTCTAAATTGAAAACGCATTTGCACGAGCACGATGCTAATCTGTGCGAAATATGTTGTTTACTATTTCCCAGTAAAGAACAACTGAAAGAACACGCTATTAGCCATACGGTAGAAGACATAAAGGACTTGGAGTGCAAGATATGCAATAAGAGGTTTCGAACAAAGCGTCAGCGAGATGTACATTGGAAATCTCATCAAAGGAATCGTAAAGACGAAGATGACGAGAATAAATGCTCGTTGTGCAGTAAAACGTATAAGGATGCAACGACACTAAAAAGGCACGTGAAGAAGATGCATTCTTCTGAACTGGAGACAACGTCAACCAATTCAAATAGCTTGGAAATGGAATCCGTTCTGAATACTAAGACGAACTGCGACACTGTATTACCGCTGAAAAAAGTGTCTGCTCAGAATATGTTGAACACAGAACCGATCGACATTCGGAATAGCACTATCGAATTCGTAACCTCCGAGGACAGTGCCGTTAATTCTGTAACTGTCATTACAAATCAGCCAGGCTCTGAAGATATACCACCAATCAGTACTGCCATGTCTGCGTTCGAAAACTCAGTTTTGTGCGGCAATAAGAAAATACCGAGTACGGCGGGTGTCAGCGACGCTCTAGCTGGGGATATGTTGGAAAATTCCAACGCAATCGCGTTATCCAGTAAAGCCCAGTTACCTGATTTACTGACTATCGAATCGCTGGAAGATTGCTTTTTAGATATGCAGGAGAATGGTTTACCTGTAGAATCAGAGTCGGAAGTTGATTCGGTCCCTTCAGTCTATAGTTTACCTGGTGCCATTATCTACAAATGTACGAAATGCTCTCAACAGTATGCGACAGAGCTCGAtttacaaaaacattttcaggCATCGGAAGTTTGTAATAACGGGATGCTGAACACTGCCGTTAGCTATTTCTACGCTTGCAACACTTGTTACCTCACCTTCAAAAGTCTTCCGTCATTTCTGAGGCATTTACAAACGCACGACGGCAATCGAACGTTTTTATGCTTATATTGCGGCGTCCAAAATCGAACCGAAGCCGAATTGACCCAGCACATAGCTCACCATGCTCTGAAAAAGGAGTATCCGTGTTTGCACTGCGGCGAGCTCTCGAGTTCGGCGGAAAGTGTCAAGAAGCACATCACCGACATACACTTGATGTCCTCGGCCGACACAAAAGCGTCGGAAACGAAGCGCAAGAAGAACGCCGGCAGCGAGCTGCTGCTTAGTGAACGAGAAAAGCTAATGCTGGTGTGTCAAAAGCCGAACAAGTTCAGCTCGATTTCGGAGAGAGTGTTATCGTCGCTGTTGAAGAAGGGCAGCTCGGATAGAGGAGAGCCTGGTAAAGATGACGACGATCCTCTCGGCGAGAACACAAGTATTTCGAAGACGAGAAAGAAGACGCACAGCAATGTCGGTTCGAAAGAGAATACTTGCAGTTACTGCGGCAGAGGCTTCAAGAAAATGTGTGATCTGGTCAGACACGTGCGCACTCATACCGGCGAGAAGCCGTTCAAATGTGATTACTGCAACAAGTGTTTCACCGTAAAGTCGATTCTGAACTGCCATCTGAAGACGCATTTTACGgtgaaaaacatattttgtcatatttgtaATCGATTCTTCGCAACGGTCGGATCATTGAAGATACATATGCGACTGCATACAGGTGATCGACCGTACCagtgtctatactgtaaagaaACCTTCCGCACGTCTGGTCATCGAGAAAGTCATCAGAAACGGCATCTTGGAGAAAAGGACAAAGCGAAAGCAATTCAGTTTATCgattctgaaatgatcgaaattgGTAACAATGACTGTTTGGATTTACCTCTGTCAGAAGACATCAACCTGGAAGATTCGGATTTCATTCTGCCCGATATGTCGGATGCCGAATTTCATGGTATAAACCTTGTCGACCTGAACAACCCGCCCGTTTCGAAGTCGGCGTTCGACTGCTCGGTGTGCGGTAAATTTTTCAACCGAAAATGGGACCTGAACAAGCACATGAACATCCATTTTCCCGAACGCGGTTACTGCTGCACTATTTGCGACGCGAAATTCAACCAGCCGGACACGCTGAAAGCGCACCTACGTCGGCACATGCCTTTGCCGTCGATAGCCTGCGACGTGTGCCATAAGAGCTTCGCGACTTTGAGTAATTTGAAGGTGCACAAAGTGCGCCAGCATCCAGAAACGCTCAACCAGCCCATACAAGATGAGAATGAACCCAACGAGATATCAATCGAGATGAGCGCTGTAGCGGATGCCGGTGGAAGCGTGACTGACTGCGATAGAGATCAGGTCAGATGGGGAGATCAGGGAGATCTGAGTTTGTCGATATTAGTCGGAAAGAATAAGAAGACCGATAATTTATCCGATTTCTTCGTCATCGAAAAGCAGTTCGACTTGAATAGCATGATGTCGGATTTGTTCCCGGATGATGATAAATGA
- Protein Sequence
- MDNDQSITSDICAITGNNLEAVLFPDYNSHESMIVTSDGISNLNSLEGALCYDEATNEFVYVNMIQSNLNGAESLSAVSQSVFSALGGSSTSLADLSTFGDGGQVMLLTNGSIVVPNDEDNMMIENSNPFVLELVHDPPDSVKVTDSNPKSSSKVPDEVIRIEFVEIGKPAKSDLSSKRGGTSDKNENEEPFESSVSKNQNPVEIVDLDEELLIGNQKSGTRYHCKLCSKKFSQLKEYRMHLLDHKDKMHKCSYCANSFNKIKNLILHEAIHNPIDTMCPLANCQKKFKRLASLKAHIKLHEEEETLTCPECGEEFRNQLYLELHYKYQPQCRASTAERISVKSFSCKLCNRKFQDMNALASHKKEHEKIKKALAAKNHRKRPVPSVPSSRINRCKECTKWFLKPSQLIRHMRIHTGERPFECTECHKAFNQANSLKIHMLKHTGDRPYLCQFCHSGFSQRGNLRQHINRVHSIPKVEEHVYECSECPCIFKKMCSLNAHRNRVHQKRYYMPLNQEKSPPLTTSSIHAKSLPVLTFRTDQQPGNSTNLNNDNDSNVDGAALNQVDQRKHYPQKSSFPDLLTDNSSVGSNAKTGEFEYRCPECPYVFQKLSNLNAHLHQVHLQQRPHSPAGETSEHSITIENGLDDVEEEDFDQLLQKQTAVNTITISVDKGNGELWNQKVFITKKQNTRHYQCSHCPKQSNKLNEIIRHLKLNMMGKLFKCDYCTKTFSQHSAFLTHLTVHATAKIYECSVCRQSFSNQVELKIHSKNHTKAQNDYMCMICLKSYSPNDLPNHQCLPGEQVGEDNAELRISQDRKSLPESTNVPRIHDKISLILPPYDCRYCDVTFSSYSKLKTHLHEHDANLCEICCLLFPSKEQLKEHAISHTVEDIKDLECKICNKRFRTKRQRDVHWKSHQRNRKDEDDENKCSLCSKTYKDATTLKRHVKKMHSSELETTSTNSNSLEMESVLNTKTNCDTVLPLKKVSAQNMLNTEPIDIRNSTIEFVTSEDSAVNSVTVITNQPGSEDIPPISTAMSAFENSVLCGNKKIPSTAGVSDALAGDMLENSNAIALSSKAQLPDLLTIESLEDCFLDMQENGLPVESESEVDSVPSVYSLPGAIIYKCTKCSQQYATELDLQKHFQASEVCNNGMLNTAVSYFYACNTCYLTFKSLPSFLRHLQTHDGNRTFLCLYCGVQNRTEAELTQHIAHHALKKEYPCLHCGELSSSAESVKKHITDIHLMSSADTKASETKRKKNAGSELLLSEREKLMLVCQKPNKFSSISERVLSSLLKKGSSDRGEPGKDDDDPLGENTSISKTRKKTHSNVGSKENTCSYCGRGFKKMCDLVRHVRTHTGEKPFKCDYCNKCFTVKSILNCHLKTHFTVKNIFCHICNRFFATVGSLKIHMRLHTGDRPYQCLYCKETFRTSGHRESHQKRHLGEKDKAKAIQFIDSEMIEIGNNDCLDLPLSEDINLEDSDFILPDMSDAEFHGINLVDLNNPPVSKSAFDCSVCGKFFNRKWDLNKHMNIHFPERGYCCTICDAKFNQPDTLKAHLRRHMPLPSIACDVCHKSFATLSNLKVHKVRQHPETLNQPIQDENEPNEISIEMSAVADAGGSVTDCDRDQVRWGDQGDLSLSILVGKNKKTDNLSDFFVIEKQFDLNSMMSDLFPDDDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -