Alag018060.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acanthococcus lagerstroemiae
Gene Symbol
-
Assembly
GCA_031841125.1
Location
CM063110.1:44665649-44667907[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 8.7e-06 0.0014 20.0 6.7 2 23 164 185 163 185 0.96
2 18 4.4e-05 0.0071 17.7 1.2 3 23 195 215 194 215 0.97
3 18 4.8e-05 0.0077 17.6 1.4 2 23 222 243 221 243 0.97
4 18 2.3e-05 0.0037 18.6 4.6 1 23 249 271 249 271 0.94
5 18 4.4e-05 0.0071 17.8 1.0 1 23 277 299 277 299 0.99
6 18 3.8e-06 0.00061 21.1 0.2 1 23 305 327 305 327 0.95
7 18 2.1e-07 3.4e-05 25.0 1.3 1 23 333 355 333 355 0.99
8 18 3.5e-08 5.7e-06 27.5 0.7 1 23 361 383 361 383 0.98
9 18 1.5e-06 0.00025 22.3 0.8 1 23 389 411 389 411 0.97
10 18 3.7e-07 5.9e-05 24.3 0.3 1 23 417 439 417 439 0.97
11 18 1.1e-06 0.00018 22.8 1.5 1 23 445 467 445 467 0.98
12 18 2.5e-07 4e-05 24.8 0.4 1 23 473 495 473 495 0.98
13 18 7.8e-06 0.0012 20.1 0.1 1 23 501 523 501 523 0.95
14 18 0.0035 0.56 11.8 0.1 1 23 546 568 546 568 0.96
15 18 0.00041 0.067 14.7 0.2 1 23 585 607 585 607 0.97
16 18 6.6e-06 0.0011 20.3 2.2 1 20 619 638 619 641 0.93
17 18 0.32 52 5.6 8.4 1 23 647 669 647 669 0.95
18 18 0.00045 0.072 14.6 0.3 2 23 676 697 675 697 0.92

Sequence Information

Coding Sequence
ATGCAAGATAACGTCAGTTTCAGTTTCCTCTTCCCATCGTTGCAGATTAACCACGATGACCTCGGTCTGGATGCACTTGGCAAAGTTACGGACACGGATTGTGATATTACTGAAATCTCCGAGAGTCAGTTCCGCATGATAGCTGTCAAAATGCATTCCACCACTAATGATCATCCCCACGAGTTTCAAACCAATTATGAATCAGGAAGTAACTTGTTAAGTACCGGCTCAAATTTCATTCCTCCGTCGATGCCAACCGATTATCCACAGTCTGCTCAGACCACTGTATCCGAGAAGCTGGAGTCAGGACCACGAGTATCTGCGAAACCCAATGACTTCCAAAAGTCATACCAACTTTCCAACTTACATATGTTACCGGACTGCGAAGACTTGCCCCCACATGTTCATTTGAATGGAGAACACAAACGCACGATGCAACAAACTGACAAACAGTCTAACTCGGAGCCAAAAAAGCCTACCGGAAAATTACAGTGTCACGAATGCAGTAAATGTTTCGCCAATAAACATAACTTGAAGATACATATGTATATTCATACCGGTGAGAAAAGACCAAAATCGTTTTGTCCTATGTGTAAAAAAGGCTTCGTCAAGCCGTGTGACTTACGCCGTCACATGGTGGTGCACACTGGTGTCAAACCGTCCAGCTGTAAAGTCTGTCGCATGAATTTCACCAACTCGTCCACTCTCCGCCAACACGCTCGTATTCACTTAAACGGGAAACCTTACAGCTGCACCCACTGTAATAAGCAGTTCACTTCGAGCTATTCTCTTCAGCGGCACTCAGTTAGTCACCGAAACACGCCACTGTATCGTTGCGAACGATGCGACGCCTCTTTGAATTCAAAATATGATTTGAAGATGCATATGATGAAGCATAATGGTGCTTTACCCTATCCGTGTTCTGTATGTGACAAAAGCTTCGGTAAGCCTTCCGATCTAACTCGGCATTTTGTCGTTCACACCGGAGAACGTCCGTTTCAGTGCACCCTATGTGACAGCAGTTTCACGAACTCCAGCAATCTGCGTATGCACATGATAACTCACTGCAAGGTGAAGCCGTATCCATGCACCATGTGCGAAAAGTCTTTCCGTCGACCCAGTGACCTGGAAAGGCATCGTTTGACACACACCGGTGAGCGACCGTTCATATGCAGCGTGTGTAACACGGCCTTCACGACCAATTACAATCTGAAAATCCATCTCTTGAAGCACAGTGGCGGTCTGCCATATCCTTGCTCTCTCTGTGATAAGTCATTCAGCAAGCCGTCGGAGTTGCAGAGGCACTCATTGGTGCATTCTGGCGAACGACCGTATCGTTGCGATCAGTGCCAGATGAGCTTCACCAACTCGAGTAACTTGAAGTCGCATGGTCTGACGCACACCGGAGAGCGACCGTACTCATGCGAAGCTTGCGGTAAAACCTTTTCTCGGCCATCGGATGTGAAACGTCATCTGCTCACGCATACCGGTTCTAGACCGTACGTGTGTTCCGTTTGCGGTATGGCGTTCACAGACGGTTCGAACCTGAAAAAACACGCTCTAGCGCACGCTAAAGGCGACGAATCATCTGGAGCTGCGAAAAAGCTCGATTCGAACTCGGATTCACAGTCGCCGTTTAACTGCGACATATGCGATGCCAAGTTTTACAATGCCGATGACATGGATACGCACGTGATGGGCCATTTCGTAAGGGTGGATGCCGTCGCTCCTTCGGCATCGTCGCAAGGTAAATACGTGTGCTCGGTGTGCGGAGCCGAGTTCAGGCACGTGATCTCGTTGCAGGAACACATTACGCAGCATACGAAAATGCCGGCCAATTGTCAACCGAGGCCGCATGTGTGTAAAATCTGCGATAAGAGCTTTAAGAGTGTGTCGCATTTGCGGAATCATCTACCCATTCATTCGGGTATTAAGCCGCACGAGTGTTCGGTTTGCAGCAAAACGTTCTTAAAGCACTCGTCTTTGAGACGACACTGCATGACCCACGATCGCGTGAATCCAGTGTATTGTAATATTTGTGGCAGAACGTTCTTGAACCAAGAATACTTGCGCAAGCATAGTGTGGTTCACATGGCTGAAGATAATGTCAGTGGGGgataa
Protein Sequence
MQDNVSFSFLFPSLQINHDDLGLDALGKVTDTDCDITEISESQFRMIAVKMHSTTNDHPHEFQTNYESGSNLLSTGSNFIPPSMPTDYPQSAQTTVSEKLESGPRVSAKPNDFQKSYQLSNLHMLPDCEDLPPHVHLNGEHKRTMQQTDKQSNSEPKKPTGKLQCHECSKCFANKHNLKIHMYIHTGEKRPKSFCPMCKKGFVKPCDLRRHMVVHTGVKPSSCKVCRMNFTNSSTLRQHARIHLNGKPYSCTHCNKQFTSSYSLQRHSVSHRNTPLYRCERCDASLNSKYDLKMHMMKHNGALPYPCSVCDKSFGKPSDLTRHFVVHTGERPFQCTLCDSSFTNSSNLRMHMITHCKVKPYPCTMCEKSFRRPSDLERHRLTHTGERPFICSVCNTAFTTNYNLKIHLLKHSGGLPYPCSLCDKSFSKPSELQRHSLVHSGERPYRCDQCQMSFTNSSNLKSHGLTHTGERPYSCEACGKTFSRPSDVKRHLLTHTGSRPYVCSVCGMAFTDGSNLKKHALAHAKGDESSGAAKKLDSNSDSQSPFNCDICDAKFYNADDMDTHVMGHFVRVDAVAPSASSQGKYVCSVCGAEFRHVISLQEHITQHTKMPANCQPRPHVCKICDKSFKSVSHLRNHLPIHSGIKPHECSVCSKTFLKHSSLRRHCMTHDRVNPVYCNICGRTFLNQEYLRKHSVVHMAEDNVSGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-