Alag000893.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- -
- Assembly
- GCA_031841125.1
- Location
- CM063106.1:17291435-17292016[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-09 2.6e-06 28.0 0.0 5 40 8 43 7 47 0.90 2 2 5.9 1.9e+03 -0.3 0.1 2 10 66 74 65 75 0.88
Sequence Information
- Coding Sequence
- atGACAGATAAACGAATAATGTTGGAACACGCAATAAGTGCTGTTGAACTCGGAGGTATGAGCATGAGAAGCGCCTCAAAAACCTACCAGGTGCCGTTTGAAACATTAAGACGACGCATCAAAAATAATGCAGATGCCGGTATACATGGTTACCACGAATCAAAACCAGGACCTGCACCAGCTTTAGGTAAACTCGAAGACGACTTAATAGAAGCGATCAATACTTTCAAAGAGATAGGATATCCATTGACAAGATTGGagGTGATGAATCTTGCCAAGGAAATTGATAATAAACGCCCAGAAGAagaacgaaaattcaaaaatgaacccAGTGATATGTGGTTTTCCAGATTTGCAAAACGCCATGACCTGTCATTAAGAGCTGCGAGAAATTTATCCAGTGCTAGGGCAAATATGGCCACTGTGGAAGTAAAAGAAGAGATGTTTGATAAATACAAACAACATACTCATAAAAAGAATTCAGATTTTCTGCAGACGTGA
- Protein Sequence
- MTDKRIMLEHAISAVELGGMSMRSASKTYQVPFETLRRRIKNNADAGIHGYHESKPGPAPALGKLEDDLIEAINTFKEIGYPLTRLEVMNLAKEIDNKRPEEERKFKNEPSDMWFSRFAKRHDLSLRAARNLSSARANMATVEVKEEMFDKYKQHTHKKNSDFLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -