Alag007773.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- tc3a
- Assembly
- GCA_031841125.1
- Location
- CM063108.1:377915-383018[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-09 2.3e-06 28.2 0.1 3 39 16 53 14 58 0.88 2 2 3.3 1e+03 0.5 0.1 17 37 679 700 677 705 0.79
Sequence Information
- Coding Sequence
- ATGGGGAAGTATATTCGGAAAACGGACCGTGGAAAGTGGACGCAGGCTGATTTAGAGGCAGCCGTTGAAGCAGTTCGTGTCCACAGAGTTTCGATGCGGCAAGCTGCTAGAGATGCGGGAATTCCGGAGAGAACACTTCGTCGTAAATTGAAGCAGCCACAATATAAGAAGACTTCGCTGGGTAGAGGACCTGTGTTGGGCGAGGATGTAGAATCGAAGCTGGTGGTGCACATTAAGAAGCTTCAACAACATGGATTTGCTCCGAGAAGAATGACAGTACGACGATTAGCGTATCGAATAGCACTTCGAATGGGAAAAGAGGAGAACTTTGACAAGAGATCTAAGAAAGCAGGAAAGGAATGGTTGCGAAATTTTCTGCGTCGTAATTCTGATTTGAGCATTCGAAAGCCGCAAGGAATATCGCTTGCCCGTGCTGAAGGAATGAACAGAGAAGAAGTAGATGCGTATTTCGACTTATTGCGGAAAGTTCTGAAAGATAACGACTTAGTTGATAAGCCAAATCGAATCTTTAACGTCGACGAATCAGGTCTGCAGTTGAATAACGAACCAACAGCAGTGATCGTGGAAAAAGGATCAAAAGACGTCCACGTCGTGAAAAGCTGCAAACGTGGTGAAACTGTAACAGTAGTCGCTTGTTGTAGCGCCGAAGGACAATACCTGCCACCCTATGTCATTATGAAAGGAGTCAATAAGAAGAAGGAGTATGAAGATGGTATGCCTGCTGGCTCGCAAGttaaaataaacagaaaatcaGCGTACGTAAATAGTGACCTATTTGTCGACTGGTTGCAAACTCATTTTGCGCCTCGTAAACCACCAGGAAAAGTACTCCTGATACTGGATGGCCATGCGTCGCACACGTCGTCTTTAGAGGTCTTCGATGTTGCTGAGcgtcacaatattatattactATGTTTACCAAGCCATACCACTCACTTCTTACAGCCTCTTGATCGTTTGTTCTTCAAAGCGCTGAAGGCGCACTATGGCACCGAATGCAACGATTTCGAGTACAGTAACCCCGGTCGCAGAATAAATCGCTTAAAATTTGGAGCACTGTTAGCTGGTACATGGCAAAAGTCTGCTACTCTCACTAACGCAGTCAATGGATTTCGCGCAACTAGAATATATCCGTTCAAACCGTCAGAAATTCCGGATCATGCGTTCTTACTTTGTAGTAGCAGCAACAACCGCAATGTTACGACTTCAACTCCTGCATCCACATCGTCAGGTAGCGTAGGATCAATGTCTGATCGCAGTGCTCCGACTTCAACTCCTACATCCACATCGTCAGGTAGCGTAGGATCAATGTCTGATCGCAGTGCTGCAACTTCAACTTCTGCGTCCACATCATCCGGTAACGCTGGATCATCGTCTGATGTCGTCTCGCCCACTCAGATTATCAACGAAGTAGCCCCACTGCTGGTGAACATATCTTCACCAAAGAAGCCGCGAAAGAAACAACACGCTGCTGTGCTTACAAGAGCAGGCGTAAAACAAAAGGAAAGTGTGCCGAAGAAAGTCCTGTTTGCAGCACAACGCAGCCTACCGGGAACAACTAAGCGCGGCAGACCTCGAAAGTCTGAGAATAAAAAACCAGTAGAAGTCAAACGCGGCAGACCAGTGAGACAAGTTCAAGTCAATTCACGTGGAAATGCGCATCATTCTCCGGTAAGAGAAGTGACCATGAATGATTGGGTGGTAGTTCAGCTGCCGACTGACAACGGGAGAAGCTCGAAACGTTTCATTGCACAGATCGTGAAAGTAAAGAATGGGCGACTAGTTGGCGATTTTCTTCGACCGAAAGCAACGAAAGAGAAGAGTGCGACGCAAAATGAATTTACACAAGCATTTCCAGGCCGTGCACCACCGAATAAGAGTGCGATATCTCGTTTGTATGCGAAATTTAATAATACTGGTAGTGTGTTAAACGCGAAGCATGATCGCGTCAGTACGGTTCTAACATCcgaaaaaatggaagaagtgGCTACACTGTTCGCAGAGGCGCCGCGTACGTCGCTTCGGAAAGCGAAGCAAGCGGTAGGCGTGTCTTATGGAAGTGTACAGCGAGCAACGAAGAAATTAAAACTCACTCCGTACAAGTTTCACGTCGTTCACGAACTCTTACCAGCTGATCCTGCTCGCCGGTTAGATTACTGTACCTGGTATCGGCAGTTTACACGGAACAATATCGCGCGCCTCGATACCGTTTTTTTTAGTGACGAAGCCTGGTTCTCGTTGAATGGCTACGTAAACAGTCAGAATTATCGGTGGTGGTCGTCTGTAAATCCGTATGGCCATATTGAAGCACCTTTGCACTCGGAGAAAATTGGTGTGTGGTGCGCGTTGTCTCGTAAACGCATTGTCGggccaatttttttcacaacCACAATTACGGCCGAAGTTTATCAGGGCATCCTCACTGATTTTATAGCGCTTCTCGAACGAGATGAACGATACTGCTGGTTCCAGCAAGATAATGCCAGGCCTCACACGGCGAAATCGACGAAAGCATTCCTGCTTGAATTTTTTGACGACCGTTTAATTTCGGAAGGATTATGGCCTGCGCGCTCCCCAGATTTAAGTCCCTTAGACTTTTTCTTATGGGGTTACATCAAGGACCGTGCGTATGTGAACCAGCCAGCCACCTTGGACGATCTGAAGGCGAATATTACGCAAATTATCAGTGAAATACCGGAAAGCATGCTGACACGAGTCATGAGAAATTCTGTAAAGCGAGCCAAAGCGTGCGTGGAGGCTGACGGTGCCCACTTTGAGCACTTATTGTAA
- Protein Sequence
- MGKYIRKTDRGKWTQADLEAAVEAVRVHRVSMRQAARDAGIPERTLRRKLKQPQYKKTSLGRGPVLGEDVESKLVVHIKKLQQHGFAPRRMTVRRLAYRIALRMGKEENFDKRSKKAGKEWLRNFLRRNSDLSIRKPQGISLARAEGMNREEVDAYFDLLRKVLKDNDLVDKPNRIFNVDESGLQLNNEPTAVIVEKGSKDVHVVKSCKRGETVTVVACCSAEGQYLPPYVIMKGVNKKKEYEDGMPAGSQVKINRKSAYVNSDLFVDWLQTHFAPRKPPGKVLLILDGHASHTSSLEVFDVAERHNIILLCLPSHTTHFLQPLDRLFFKALKAHYGTECNDFEYSNPGRRINRLKFGALLAGTWQKSATLTNAVNGFRATRIYPFKPSEIPDHAFLLCSSSNNRNVTTSTPASTSSGSVGSMSDRSAPTSTPTSTSSGSVGSMSDRSAATSTSASTSSGNAGSSSDVVSPTQIINEVAPLLVNISSPKKPRKKQHAAVLTRAGVKQKESVPKKVLFAAQRSLPGTTKRGRPRKSENKKPVEVKRGRPVRQVQVNSRGNAHHSPVREVTMNDWVVVQLPTDNGRSSKRFIAQIVKVKNGRLVGDFLRPKATKEKSATQNEFTQAFPGRAPPNKSAISRLYAKFNNTGSVLNAKHDRVSTVLTSEKMEEVATLFAEAPRTSLRKAKQAVGVSYGSVQRATKKLKLTPYKFHVVHELLPADPARRLDYCTWYRQFTRNNIARLDTVFFSDEAWFSLNGYVNSQNYRWWSSVNPYGHIEAPLHSEKIGVWCALSRKRIVGPIFFTTTITAEVYQGILTDFIALLERDERYCWFQQDNARPHTAKSTKAFLLEFFDDRLISEGLWPARSPDLSPLDFFLWGYIKDRAYVNQPATLDDLKANITQIISEIPESMLTRVMRNSVKRAKACVEADGAHFEHLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -