Alag027367.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- UPB1
- Assembly
- GCA_031841125.1
- Location
- CM063113.1:10286395-10301382[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-11 1.4e-08 35.3 0.1 5 39 94 128 91 133 0.91
Sequence Information
- Coding Sequence
- ATGGCCAAAGCTGGATTTTATTGTGTACCAAATAGTAACGATGCTGGAAAATGTTTCGTATGCATGAAGGTATTGGACTCATGGGAACAGGATGATGACCCACTGGAAGAGCATAAAAAACATGCACCGAAATGTCCTTTCATCAAGttgggaaaagaagaagagaattaTACATTGATCGATCTACTAGAATTATCAGAAAACATGGATGTAAATATAGTGAGGCCCGATGATTTGGACTTATACGACCCTGATGGAGAGTTTGACTACGAGAATGTGCTACAAAAGGCAGCCGAAGAAGTACGTTCGAAACGTTTGTCTCTGAGAGCAGCTGCGTCCAAATACGGTCTCCCGAAGACAACTTTGCAGCGCAGGTGCAAAACTCCGTatcgaagaagaaaataccGCAGATCGACTTCGTTGACCAACCGCACTAATCCTCGGACGAAGAATGCTGCTGAAAACTTCGTTGTAGTTGATACTGTCTGGTCGGAAGCTATTATCGAAGAAGAGTACATTTCGGACAGCAGCACGATGGCTTCTATAAAGAACGAAACAGATACAGAAATCGTAGATTTCGAGCAGTGCCTAGAGGAACACATACCAGATTCGTTATTACCAGACATAAAACGACTTCTCTACGGCAGTAATGTACAGAAACTTATGATTCCAGATGGGGTGTATACGCTTGCTGATGAATCGAATTTCAAAGTCAAAGCATTTCATTTCGGCGCCGAGAAAGAAGAGCTCAGACGACCGAGgATAGTTCGACTTGGGTTGGTACAAAACCAGATTGTCTTACCTACCACCGATAGCGTAGCTATGCAAAAAAATGCTTTGCTAGACCGTATTCAGACTATAATTAAGGTCGCGGCAAAAGCTGATGTCAATGTTCTGTGTCTTCAAGAAGCATGGAATATGCCTTTTGCATTCTGCACTCGTGAAAAACGACCTTGGTGCGAATTCGCCGAACCTGCTGAAACGGGGCCGACTACCAAATTCTTGCAGAGAcTATGCAAAGAAAACAATATGGTGATTATTTCACCAATACTAGAGCGAGATGAAGTGAAAAATGATATCATTTGGAACACAGCCGTTGTCATCGATAATAATGGTAAAGTACTTGGGAAGCATAGGAAGAATCATATTCCCAGAGTGGGTGACTTCAACGAATCAACTTACTATATGGAGGGAGATACTGGACATCCTGTCTTCAAAacaCAATTCGGAAAAATAGCTGTAAATATATGTTACGGACGTCATCACCCTCTGAACTGGTTGATGTTCGGGCTCAACGGAGCAGAAATCGTGTTCAATCCGTCTGCCACTGTTGCTGGATTAAGCGAACCTCTGTGGGGAATTGAAGCCAGAAATGCTGCAATCGCCAACGGATTCTTCACATGCGGTATTAACCGCGTCGGATCTGAATACTTTCCCAATGAATTCACATCCGGAGATGGAAAACCCGCCCACCACAAGTTCGGTCACTTTTATGGATCGAGTTACGTGGCAGCCCCCGATGGATCGCGAACACCAAGTTTGTCAAGGATGCACGATGGCTTGCTGATAGCCGAACTTGATTTGAATTTATGTCGTCAGGTCAAGGATCATTGGGGTTTCCAGATGACTCAAAGGTTAGAACTCTACGCCAAATCACTTGCCGAAGTCGTGAAACCAGATTTCAAGCCTCAAATTATCGAATAG
- Protein Sequence
- MAKAGFYCVPNSNDAGKCFVCMKVLDSWEQDDDPLEEHKKHAPKCPFIKLGKEEENYTLIDLLELSENMDVNIVRPDDLDLYDPDGEFDYENVLQKAAEEVRSKRLSLRAAASKYGLPKTTLQRRCKTPYRRRKYRRSTSLTNRTNPRTKNAAENFVVVDTVWSEAIIEEEYISDSSTMASIKNETDTEIVDFEQCLEEHIPDSLLPDIKRLLYGSNVQKLMIPDGVYTLADESNFKVKAFHFGAEKEELRRPRIVRLGLVQNQIVLPTTDSVAMQKNALLDRIQTIIKVAAKADVNVLCLQEAWNMPFAFCTREKRPWCEFAEPAETGPTTKFLQRLCKENNMVIISPILERDEVKNDIIWNTAVVIDNNGKVLGKHRKNHIPRVGDFNESTYYMEGDTGHPVFKTQFGKIAVNICYGRHHPLNWLMFGLNGAEIVFNPSATVAGLSEPLWGIEARNAAIANGFFTCGINRVGSEYFPNEFTSGDGKPAHHKFGHFYGSSYVAAPDGSRTPSLSRMHDGLLIAELDLNLCRQVKDHWGFQMTQRLELYAKSLAEVVKPDFKPQIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -