Alag007613.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- -
- Assembly
- GCA_031841125.1
- Location
- CM063107.1:74440024-74448494[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-09 9.2e-07 29.5 0.0 3 35 29 62 27 70 0.88 2 2 0.14 45 4.9 0.0 2 20 848 866 847 866 0.89
Sequence Information
- Coding Sequence
- ATGTCGTGCtcaaaagaattcaaaactgttaaaaaaaagatgaaacatGTTGATAAAAATAGAAGACTGTATTCGTATTCTCCAAGAAAGATTGCGCTAGCGATAAATTCCGTATCCAAAGACCGTATGAGCGTCTTGAAGGCAGCTGAACTGTGGGGTATTCCTCGATCGACATTGAGAGATAAACTCCGTCTAGGATCTACGAGTGTCTATCGCACCGGACCAGATCCTGTTCTGGGttacgaaattgaaaaagaattagAAACATGGTTGCTGAAAATAATTCGTCGAGGTGCGCCAATCCCAATCGAAGGGTTATGTTACAGCGTGCAGCACTTATGTAATATGAAAGACCTGAAGACCCCGTTCAGGAATAATTACCCAGGTCGTAAATGGGTAAAAGGTTTCTTTGATCGACACCcaatattttcagttaaaaaagcTGAATACCTGTCTCGCCAACGGGCATTATTGACTGAAAATGCTATCAGGAAATGGTTCGCAGATGTTCGGCAACAACTTTGCGAAGAAGGTATTGATCTTCAAATATTGGAGGATCCAAcacgaatttttaatttggatgAATCTGCCTTGTATACAAATCCGAGTGGTAGTCTAGTAATCGCCGAAAGAGGGAAAACTGCGAATCATATCACTGGGAACAGCAAGGAAAATGTTACCCTTCTTTTCAATGCGAATGCATTGGGAGAAGTAGTAACAAAATCGATCCTATTACCATATGAACGAATGCCATCACCAATATTAAAAGCAATACCTCCAGAATGGGGTACTGGGAAAACTCCTAGTGGTTGGATGACTGCCAAAGCTTTCTACGAGTATATGGgaaATGATTTCTACTCGTATTTGCAAGAAAAAGGGATCACTGGACCCGTTATTGTCTTTCTCGATGGACACTCGAGCCACCTTTCCCTGCCATTATCTGAATTCTGTATGCAACACAACATTCATTTGGTCTGCCTCCCTCCAAATGCGACGCATTTCATACAACCGTTAGATGTTGGTTTCTACGGACCCTTCAAGAGAAAGTGGCAGAAGTTTGTAAAATTGTTTCGAATCAAGAACCAGGGCCGAGATATTAAAAAGCATGAAATCCCTCAACACGTTAATGATTTAGGTTTAGACTTTTTTGAAATGGATCTTAAGAGAGCCTTCCAGTGCTGCggtatttttccattcaacGAGAACAATCTAGACTATACAAAGTTGGTTACTCACGAGCATGCTGAAATTTCTaaggagaaagaaatgaaagaagataGATTACAAAATTCATTTGCCATGTTTGAATCTCGAATTGGAAATGAAGTGCTCGCTGAATTTGTGTCAACAAGGAGTGCTGGAATAGGCTGGCATGGCGATGAGAAGTATTTGGGTCTTTATGATTTGTGGAATTTGTGGAAGGATGATATGGAGGGAAATCCTATAAGCGACCTTGATATGCTGAATTCAATACTAACATCTACTGATTCCTGCAATCTTCTTGTCGAGAATGGCCATGTTACATTTCTTGTAACAGCTCCAAGCGATGAACCAGATGTTCAGAATTCACGTTCGCCTTCAAATACCATTGAACCAGATGTTCAGAATTCACCTTTGCCTTCAACTAGCATTGAACTAGATGTTCATAATTCGCCTTCgccttcaaaaatttcttacagTGATGTTCACCTGTTGGGAATAGGCCTACTCACcccagaaactaagaataatCATTGTGAGAGCAGTATTCCCAAACATTCTCCTACGATTCCTGAATTTTTTATAACCCTTGAACATACAAGTGACAATATTGAAGATGTCAATGAAGAAATTGTTAACTCTGAAAGTGGGGTCCAACCTAATGAGGATGTAATAATGGAACATATTGAACATGAAGAAAGAATTGTACATGAAGAAAGAGCTGAATGTCAAGAAGTTCAGAACCCTGAAGGTATTGTTCTATGTAATGAGAACAAACTCGATTCGCAATCTACAGTGAGTGATATATTGAAATCAATTATTCTCTTCCCTGAAAAAGAGGAGAAGAATCCTCTTCAAGCAATTAGCCTAATTTCCTCGAGAAAATGGCAGAATTTATTTCATGCGAAAgaggaagagaagaagaaaaaattgagtaatacaagaaaaagaggaagaccTAAAATCAGCAAAGAAATCAGTGAAGAAGATGAAATTCTTGCTCTAGAAATAGAAGATCAGTCTGTAACCCTAccaaataagaagaaaaaaagaggaagaccaAAAATCGTGAAAGAAAATGAGACCTTACAATTGGCTgaagaattagaaaataattcTGCAACCCAATCTGTGAAAGAAAAGGGAACCATGAAAGTTgtgcagaaaacaaaaaagaagccTACTACAAGTTTGGCATCTTGTGAAGAGGGAGACAATAATGATGAAGATTTACAACCAAATTCTGAACTGGACAAGGGAGATAATACTCCTACTGCAAATGTGGAAGACCAGAcgGTGATGCTGCAAAGTAAAACGGAATGCCGATGTGAGAAAGTTGAGCCAGAAAGTATGGAGAAGGCTCTGAAGGCTGTTGCAAAGAAAGAATGCTCAGTATCAGACACCTTGCAGAACTTTCGCAAGAGAGCTTATACGTTTGCTGTTGCCTTAAATAAGGAAGTCCCAGAATTGTGGAAGAAGACTCAGATAGCCAGTCAGAAATGGGAAAGAGGTTTTCGTAAATGTTATCCGGACATGGTACTGAGAAAACCAGAGGCTACCAGCCTCAACCGAGGTCTGATGTTTTCAATATACAATGTCGCAGAAGCTGTAGGCATCGCATATCCGAAAGCATTTACAATGCAGAATATTGTCAGTGGATTCAAGTGCACTGGGATTTATCCGTATAATGCTGATATTTTTCGAGACGTTGAATTTCTGTCTAGTTTTATCACAGATCGCCCACAGCCTACATTGTCAGAAGAACCTGCTTCTGCACAATCTTCTATGAAATTCAATCGCCTGTTGGACAAAGATCTACTCAAACCAGAAGACAAAATTCACGACATCACATACAGATTTCTGAGAACAGCAAAGCAGAGGGTCGACCGTCCCACACATCCATCTCAGAGAAAGAAGAAGACTGATGTCAATGCTGAGAAACCAATGGAATGTGTGGTTCTACCTGATGGTACCCTCGAGAAGGTTACCACTGAAGGAGTTCACGAGGAGGTTAGCGACGGAGGAGTTCCCGAGGTGGTCAGCGATGGAGGAGTTCACGAGGAGGTTAGTGACGGAGGAGTTCAAGGAGGTTAG
- Protein Sequence
- MSCSKEFKTVKKKMKHVDKNRRLYSYSPRKIALAINSVSKDRMSVLKAAELWGIPRSTLRDKLRLGSTSVYRTGPDPVLGYEIEKELETWLLKIIRRGAPIPIEGLCYSVQHLCNMKDLKTPFRNNYPGRKWVKGFFDRHPIFSVKKAEYLSRQRALLTENAIRKWFADVRQQLCEEGIDLQILEDPTRIFNLDESALYTNPSGSLVIAERGKTANHITGNSKENVTLLFNANALGEVVTKSILLPYERMPSPILKAIPPEWGTGKTPSGWMTAKAFYEYMGNDFYSYLQEKGITGPVIVFLDGHSSHLSLPLSEFCMQHNIHLVCLPPNATHFIQPLDVGFYGPFKRKWQKFVKLFRIKNQGRDIKKHEIPQHVNDLGLDFFEMDLKRAFQCCGIFPFNENNLDYTKLVTHEHAEISKEKEMKEDRLQNSFAMFESRIGNEVLAEFVSTRSAGIGWHGDEKYLGLYDLWNLWKDDMEGNPISDLDMLNSILTSTDSCNLLVENGHVTFLVTAPSDEPDVQNSRSPSNTIEPDVQNSPLPSTSIELDVHNSPSPSKISYSDVHLLGIGLLTPETKNNHCESSIPKHSPTIPEFFITLEHTSDNIEDVNEEIVNSESGVQPNEDVIMEHIEHEERIVHEERAECQEVQNPEGIVLCNENKLDSQSTVSDILKSIILFPEKEEKNPLQAISLISSRKWQNLFHAKEEEKKKKLSNTRKRGRPKISKEISEEDEILALEIEDQSVTLPNKKKKRGRPKIVKENETLQLAEELENNSATQSVKEKGTMKVVQKTKKKPTTSLASCEEGDNNDEDLQPNSELDKGDNTPTANVEDQTVMLQSKTECRCEKVEPESMEKALKAVAKKECSVSDTLQNFRKRAYTFAVALNKEVPELWKKTQIASQKWERGFRKCYPDMVLRKPEATSLNRGLMFSIYNVAEAVGIAYPKAFTMQNIVSGFKCTGIYPYNADIFRDVEFLSSFITDRPQPTLSEEPASAQSSMKFNRLLDKDLLKPEDKIHDITYRFLRTAKQRVDRPTHPSQRKKKTDVNAEKPMECVVLPDGTLEKVTTEGVHEEVSDGGVPEVVSDGGVHEEVSDGGVQGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -