Alag031402.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- -
- Assembly
- GCA_031841125.1
- Location
- CM063114.1:20687686-20699819[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-09 4.8e-07 30.4 0.0 4 40 16 52 13 56 0.87 2 2 0.055 18 6.2 0.0 5 40 607 643 603 645 0.85
Sequence Information
- Coding Sequence
- ATGGTGCGACattacaaaaagaagaaattgaaatatggTGAAGGCGTTCTTCAGGCTGCAATTCAGGAAGTTCTGTTAAATGGAATGAGTCAACGAGATGCTGCACGAATGTATGGTGTCCCACGGGCAACTATAGGCTTTCGGTTGCAGGAATCTGGAGATCATGCTCCAAGAGGACGACGTCAGGTATTTTCTGCagacattgaaaaaaatcttgctGATAAAATCAAAGTGATGGCAAAATGGGGCTTCGCTCTTACGAAAAAAATGGTCTTGAGTACAGTTCAGGATTATGTAATTCAAAATGGAATTACTACACCTTTTACTGACAATACTCCAGGACATGACTGGTACATCAACTTCATGAAACGCaataacataaaaatgaagAGAGTTCAACCGTTGGAAAATTCTCGCCGATCAAATACGTCTGATCCCTTCTTGATTTATGGATTTTATGATTTGCTGGAAGATCGTATGGATGCGTTGCAGCTGCGAGACAAACCCACTCATATTTACAATCTCGATGAGTCGGGTTTCTCTTATGACCCATACCGAACTAGAGGAGCTGCAGGCTCATCTCAAAGTGCCCATCGAAATGTTATGGGATCTGGAAAGGAGAATACAACCGTTCTTGCTTGCGTATCAGCTTCAGGAAATATTCTTCCGCCATTGATAATATTTACAGGAATGAGTTTGTGGAGCAATTGGAGTGGCAGTCAGGCTAGTGAAGCAATGTACGCTCATTCGGAAAGTGGATATATAACCACTGCcattttcaatgaatattttaaaaagttctgCGAGTCAGTCATTGAACGCCCTGTACTTCTTATTTTCGATGGACACATTTCACATCTAGCCCCGTCAACAATCAAGAAGGCCGTTGAAGAGAATATCACAATCCTGAAGTTGCCCTCACATACCACTGACACTCTGCAACCGCTTGACAAATCGGTTTTTGGTCCTATGAAATTGGACTGGGACCAAGTACAGATAGAAttccaaatgaaaaatcaaagaaagatGACGAAAAGTGAATTTGCCACTGCAATTTCTACATTGTTTACAAAGATAAATGTACAGAACGTACTAAGCGGGTTTTCAGGGACTGGAATATTCTCTCTAAATAGAAACAAATATCCACTTAAGAGATTGAATCCTCttaagctggaaaagtataacaaTATGAAGAAGGCGCCAATTGCAGATGACGCTGTCCCGCCATCTGCACACACATCAGTGGCAACTCCAGGTACATCCTCATCAGAAGTGACTCTGTGCACCTCTTCAGAGACGATCACAAGCACCTCACCAATAATAAACCAAGATGACTTGTCAACAACAACCACAGGTTCGTCCACACCACAAGAGTCCTTGTCAGAAAGTTCGAAGTCAGGGACAGCCTCGTTTGAAGAAATACTTCTGCAAAAAATTGGTAGAACTAATCCTCCATCCATAAAACGGCGTAAAATTGACATGAGTGCTCAGGTCATTACATCAAGAGAATTTTTTGATGCCATAAAGGCCAAAGAAGAAGCCGGAAaaccaaaaggaaaaatatCACGCAGTAGACTTCAGGTCAAGagCAATGCCAGTGAGGGGAAGAAAAATGCAGGAATTCAAAAAACATTGGTTAGTCCCTCTACAGCAGCTGTAGCTAGTGGgttgaagaaaaggaagaagcgTGATGAAGAAATGAATGTGAGAGCAGTAAAAAATGCAAATGCTGTCATTGGCGATTACTTTGACACCATTGAAGGGAAACATCGTAGAGTCTTGGGCAGTCGCTCATACTTGGATTGTGATGCTGAAAAGCTTAATGAATAcgtccgaaaaattgaaaataaagaaatttcgaaagttAAGGCAGCTGCTGAGTGTGAAGTTTCTTTAAAAACTTTGTACAACAAAGCATTCAATCGTCATCAACGTCCAGTGGGAAAGCCTTGTGTTTTTACTGAAGCTGAGGAGGAACAATTAGCTCGGCATCTAATAACAGTGTGTGAATTTGGATTCCCTCTTACTACCGATGATTTAAAGTCCTTGATCAAAATGTACGTTGAGAAAACCGGAAGGCAGATGAAGCAGTTTTGTGATGGAAAAACTCCAGGCAAAGATTGGGTTAAAGGATTTATGAATCGCCGTAAAGAAGTTGCTGTTcgtttttcatcaaatattaAGAGAGTTTGGGCCAATGTGAACGAAGAAATGCCGAGAGAATATATTGCACGACTCGAAGCCACAATTGATGTGCCACCCGATTGTATTTACAACTGTGATGAAACGAATTTGGCAGATGATCctgAGGCAATCCTTATGCAAGAAGAGCTGCTAACTATGTTAATCGAGATTGAAGCCATCATGAATTCCAGACCTCTGAGCTGCGCTGAACTCACTGAAGGCAAACCATTGAAGTCATAA
- Protein Sequence
- MVRHYKKKKLKYGEGVLQAAIQEVLLNGMSQRDAARMYGVPRATIGFRLQESGDHAPRGRRQVFSADIEKNLADKIKVMAKWGFALTKKMVLSTVQDYVIQNGITTPFTDNTPGHDWYINFMKRNNIKMKRVQPLENSRRSNTSDPFLIYGFYDLLEDRMDALQLRDKPTHIYNLDESGFSYDPYRTRGAAGSSQSAHRNVMGSGKENTTVLACVSASGNILPPLIIFTGMSLWSNWSGSQASEAMYAHSESGYITTAIFNEYFKKFCESVIERPVLLIFDGHISHLAPSTIKKAVEENITILKLPSHTTDTLQPLDKSVFGPMKLDWDQVQIEFQMKNQRKMTKSEFATAISTLFTKINVQNVLSGFSGTGIFSLNRNKYPLKRLNPLKLEKYNNMKKAPIADDAVPPSAHTSVATPGTSSSEVTLCTSSETITSTSPIINQDDLSTTTTGSSTPQESLSESSKSGTASFEEILLQKIGRTNPPSIKRRKIDMSAQVITSREFFDAIKAKEEAGKPKGKISRSRLQVKSNASEGKKNAGIQKTLVSPSTAAVASGLKKRKKRDEEMNVRAVKNANAVIGDYFDTIEGKHRRVLGSRSYLDCDAEKLNEYVRKIENKEISKVKAAAECEVSLKTLYNKAFNRHQRPVGKPCVFTEAEEEQLARHLITVCEFGFPLTTDDLKSLIKMYVEKTGRQMKQFCDGKTPGKDWVKGFMNRRKEVAVRFSSNIKRVWANVNEEMPREYIARLEATIDVPPDCIYNCDETNLADDPEAILMQEELLTMLIEIEAIMNSRPLSCAELTEGKPLKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -