Aori038742.1
Basic Information
- Insect
- Acanthacorydalis orientalis
- Gene Symbol
- -
- Assembly
- GCA_034766995.1
- Location
- CM068325.1:6060744-6063121[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00066 0.093 14.4 1.6 1 23 84 106 84 106 0.98 2 9 0.0012 0.16 13.6 1.0 1 23 112 134 112 134 0.98 3 9 2.6e-05 0.0037 18.8 1.2 1 23 175 197 175 197 0.98 4 9 0.001 0.14 13.8 0.1 1 20 487 506 487 510 0.90 5 9 0.067 9.5 8.1 1.2 1 23 516 538 516 538 0.95 6 9 0.0004 0.057 15.1 0.2 1 20 560 579 560 580 0.95 7 9 0.00043 0.061 15.0 2.4 1 23 585 607 585 607 0.96 8 9 0.17 24 6.8 0.4 1 23 672 694 672 694 0.98 9 9 1.8 2.5e+02 3.6 0.0 6 23 712 729 712 729 0.92
Sequence Information
- Coding Sequence
- ATGAAATTAACACGTCGGATACTAGTAACGCACGCACGCTCGTACGCGTCGATCTCCCCGGACGACGGCCTGTCGTCGTACATCTGCTACTCGTGCGTCCTGAACGTCGAATCGTTCGTCACGTTCCGGAAGAAGTGCGTCGAATCGGCATCGATCATGAAGAAGATCTACGACGACATAAAGGAGGAAGAGGCCGCGCACGACCGGACCGCGAGCCCGCGGCCCGGGACGAGCGCCGACGTCCGAGCGTTCTACTGCGCGCACTGCGACGGGCAGTACCGGACCGAGAACGAGCTCGAGCGGCACGTGAGGCGGCACGCCGACCACCTGCTGTACAAGTGCGAGCTGTGCAACGAGCGGTTCGTGCTGAAGTCGAAGTTCGTCGAGCACAGGTCGGTACACGCGAGCGTCGAGACGACGAAAATCGGGCCCGACTCGGAGGAGACGGTCGCGGACGACGGGACCGGGCGCGAGACGATCCGCACGGAGCGCGCGCGCCCGCACGATGAGAACCGGAAGCCGTACGAGTGCGGCCTGTGCGGCAAGTCGTTCGGGCTGAACTCGCTGTTCAGGAAACACAAGCGGAACCACACGGTGCCTTTCAAATCGGCGACGAGCAAGTACCGCTCGCTCCTCAAAAAGTCGTTCCGGCCGACGAGGCACAAGGCGTGCGGTTGCAAATTCTGCAGCAAAATCCTCGCCGAGAGCGGAGCCGAGGAGTCGTGCGGCCGTTCGTCCGACGATGGACCGGCGGACGGCCGCTCGGACGCCGATCCGTCGGAGGACGTTCCGGCGTCCAGACTCGATCGGATTCAGATCGTGAATGTATTCTCGTTGAAACGTAGCGATCGAACCGATCGGCAGACGACGTGTCCCGGCGGATCGGACGAAGTCCGAGATCCGAGGCCGGACGAAGCGAGAGATCCGAGGCCGGACGAAGCGAGAGATCCGCGGCCGGACGAAGCGAGAGATCCGCGGCCGGACGAAGCGAGAGATCCGCGGCCGGACGAAGCGAGAGATCCGCGGCCTGACGAAGTCAGAGATCCGAGACCAGAAGAAGTAGGAGATACGAGACCGGAAGAAGTAAGAGATTCGTGGCCGGACGAAGTCAGAGATATACAACCGGATGAAGTCAGAGATCCACGACCGGATGAACTTCAAAATTCACGACCGGACGAAGTACGAGATCCTCGGCCGGACGAAGTCAGAGATCCACGACCGGACGAAGTTCAAAATCCACACCCGGACGAAGTTCAAAATCCACGACCGGACGAAGTTCAAAATCCACGACCGGACGTAGTAAGAGATCAGCGACCGGACGAAGTTAAAGATCGACGACCGGACGAAGAATCCGTGAGCGAAATGGCGAGGATGTTGAAAATCATCGGCGTCGAGAACGCGCACCAGCTCGTCGTCAACGACGACGAGTGCGTCCGATTCGAAAACGAGACGGTTTCGTTCCGGTGCGAGCTGTGCGGCGAGGAGTACAGCTCGGAGAGCCTGCTCGAGGACCACGTCGTCGACTACCACGAGAACCGTCCGTTGCACAGGTGCGACGTCTGCGGCGACGTCTTCATCCTACGGACCGACTTCGCCAAGCACCGTTCGTTCCACTCGAACGAGACGGAGAGGAGGAGGAGGCCCGGCAGGCCGTGCCGATTACCGTACCGTGCGTCGTACGACTGCGGCGTCTGCGGCAAGTCGTTCAGATTCAAGAGCGTACTCGACAGGCACAGAGGCTGCCACGAGAAATTCTCGTGCGACGTCTGCGGCAGAAAGTTCCGTAAACGGAAGTACTTCCTCGCGCACGAGACGAGACACTCGAAAGACTCGGTCCGACCGTGCAGAGACCCCGAGGTACGGCTCCTCCCGATAGACCGGGAGAAGATCGTCGACGGAACGAAACGGTCGCACGGACCGGCCGAAGAGCGAGACGGAGACCGGGTCGACCGGTCGTTCCGGAACGGAGGTCTCCTCGCGGCGCGCCGGTCGCACAAGAAGAAAAAGAAGTACTATCCGTGCGACTCGTGTCCGAGGTGGTTCGTGAAACGAAAGTTCTACGACGCGCACGTGAGAACGCACGCGCCGAACGACGCGCGGGCGGACCGGAACCGGACGTACGACCGCGAGCCGTGCGGCGAGTCGTTCCGCTACACGTACGTACTCGAGCTGCACGTCGACGACCACGAGAGGGACGGAGCTTTCGGACGGCGCTCGTCGGCCGACGACCTCGACTTCGGGTCGACCGACATACGGAAGATCATCGGAATCGACCGGTCCGATTGA
- Protein Sequence
- MKLTRRILVTHARSYASISPDDGLSSYICYSCVLNVESFVTFRKKCVESASIMKKIYDDIKEEEAAHDRTASPRPGTSADVRAFYCAHCDGQYRTENELERHVRRHADHLLYKCELCNERFVLKSKFVEHRSVHASVETTKIGPDSEETVADDGTGRETIRTERARPHDENRKPYECGLCGKSFGLNSLFRKHKRNHTVPFKSATSKYRSLLKKSFRPTRHKACGCKFCSKILAESGAEESCGRSSDDGPADGRSDADPSEDVPASRLDRIQIVNVFSLKRSDRTDRQTTCPGGSDEVRDPRPDEARDPRPDEARDPRPDEARDPRPDEARDPRPDEARDPRPDEVRDPRPEEVGDTRPEEVRDSWPDEVRDIQPDEVRDPRPDELQNSRPDEVRDPRPDEVRDPRPDEVQNPHPDEVQNPRPDEVQNPRPDVVRDQRPDEVKDRRPDEESVSEMARMLKIIGVENAHQLVVNDDECVRFENETVSFRCELCGEEYSSESLLEDHVVDYHENRPLHRCDVCGDVFILRTDFAKHRSFHSNETERRRRPGRPCRLPYRASYDCGVCGKSFRFKSVLDRHRGCHEKFSCDVCGRKFRKRKYFLAHETRHSKDSVRPCRDPEVRLLPIDREKIVDGTKRSHGPAEERDGDRVDRSFRNGGLLAARRSHKKKKKYYPCDSCPRWFVKRKFYDAHVRTHAPNDARADRNRTYDREPCGESFRYTYVLELHVDDHERDGAFGRRSSADDLDFGSTDIRKIIGIDRSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -