Aori020730.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acanthacorydalis orientalis
Gene Symbol
Snai1
Assembly
GCA_034766995.1
Location
CM068318.1:27725725-27735883[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.027 3.7 9.3 0.1 1 23 375 397 375 397 0.95
2 12 0.00018 0.026 16.1 3.8 1 23 405 427 405 427 0.99
3 12 3.8e-05 0.0053 18.3 0.4 2 23 435 456 434 456 0.97
4 12 1.6e-06 0.00022 22.6 1.4 1 23 462 484 462 484 0.99
5 12 0.00016 0.022 16.4 2.2 1 23 491 513 491 513 0.98
6 12 7e-06 0.00098 20.6 0.5 1 23 519 541 519 541 0.96
7 12 3.2e-05 0.0046 18.5 0.3 1 23 547 569 547 569 0.98
8 12 9.4e-07 0.00013 23.4 1.2 1 23 575 598 575 598 0.96
9 12 1.1e-05 0.0016 20.0 1.1 1 23 604 627 604 627 0.96
10 12 6.2e-06 0.00087 20.8 2.6 1 23 633 655 633 655 0.99
11 12 0.00014 0.02 16.5 0.4 1 23 661 683 661 683 0.94
12 12 0.00082 0.12 14.1 0.1 1 23 689 713 689 713 0.93

Sequence Information

Coding Sequence
ATGAGTCAGTTAAACACATCTGTGAGGGACAATCCTCACTGTTTAATTTGCAACAGTCGTGTAGGTGTGTCTACTCGAAACTCTGTTCAAGTTTTCAACAAAcaggTTTTAACATGTTCGGAACGCCCTATGGATACTATAATATCTGGAGTGGTGGGTAAAGTAGTAAAAGAAGATAATGTTCAATCTCATttaatttgtaagaaatgttataaactttttttggaATATGATGAATTAGAAACAAGatcagcagaaataaaaaatgaaatagttacAAATTACAAACGTACATTATCGAAGTATAAACACAGTTCTTCAGTTGAAGGAGAAAatgaattgaaagaaattacaataaaaaaagaaccagaagaagaagaagatgaAGAACAGGTTAAAGACAGTTATGaacttggaaaaaaaataagtaattcaaTTCTTCAAAAAAAGGATGAACAGATATCAAATGAACAAAAACAGATATCAAATAAACCAACAGAATCGACAGAAATGGGTGACATTGAAGAACAATTGGAAAAAATGCATGCATCTGCTGAAGATATGGAAGTTGATGAGATAGTTGAACGTGTGGAAGTTATTCAAGATGCTGATGAATGCACAGAAAATGTTCCACAAATATCAATACCAGAAACTAGTGATGCTGATGACACTTCACATAGTTTTCATGGCTTTACTCAATCTGATGAACCTGTTGATGcagGAGCTATTGACAATTCTGATGATTCAGATTATCAGCCACCATTAATTTTAGAAGTAATACAGAATGGGgaatcaaataatgaaaaacaaaatggaGAAGATAATACTGCTGCATTATTAGAAGCAGCTGCTATGGCTGAGCAGACAATTCAAGAAGATGgATCATTagtatataatgttaaaattgaacCAGATATGATGTATGATGATGTTAAACAATTAATGAGACGCAAAGTTGGTGTTCGTAAACTTCTTAAACCAAAAAACGATGAATATTTGGAGcctATTGTCTCTCGTGATGGAGCCCTGTATACATGTCTAATATGTGATCGTGAGGAAAAAGCTGTTGGAGATGGTAAATCAATGATGTTACATGTGAAAACAGTTCATGATCTGCGTGTATATATCTGTGATGTATGTGGTGATGACTTTCGAAAGCGCAATGAATTAAGCCTACATTTAGATGAACATGTTGCAACAGAAGAAGGTGATTTCCAGTGTGAGATTtgtaatagaatattttgtaatttgagACTATTTAGAATACATAAAAGAATGCATTATCCACAATCAAAGTTGTGGACTTGTGAAACATGTGGTAAAAGATACagttctcGTAATTTATTAGATGAACATATCAATACTCACACAGGAATACGGCCCTATGTATGTAATGTTTGCAGTAAAGATTTTGCTTCAAAATATACTTTCCGTGCTCATATGAAAACACATGAAGTACGGCCAAGACCTTTTTCATGCTCACAATGTGAAAAAACATTCTTAAGTCAACAAAACTTAACACAACATGAAAGAACGCATACTGGCATTAAAGATTATGTATGTCATTTATGTGgtaAAGCTTTTGGTTCACCACATAATCTTGAAGTGCATAGTATTGTTCATACAGGTTATAAACCTTTTATATGTCGAACTTGTGGTAAAGCATTTGCTCGTAAAGCTGAAATTCGAGATCATGAACGAACACATACTGGGGAACGGCCTTATCAATGCGAGTTTTGTGGCGCAACTTTCAGTCAAAGAAGTAATCTTCAGTCACACAAACGAGCAACTCATTACGATGATAAAAGGTACAAGTGTCGAGAATGTGGAAAAGGTTTTAAAAGAAGAAGaCTTTTAGATTATCATATGAAAGCTGTTCATACAGGTGAACGTCCTTTTAAATGCAATGTTTGTGATGCTACTTTCGTTTATcctgaacattttaaaaaacatcgTCGTATTCATACAGGAGAAAAGCCATTTTTGTGTgaagtCTGTGGTAAAGCATTTAATTCGAGAGATAATCGTAATGCGCATCGTTTTGTACACAGTGATAAAAAACCCTACGAGTGCCTTGTTTGTGGCATGGGATTCATGCGAAAGCCTTTGCTATATGCTCATATGGAAACTCAGgGACATCTGAATGATACGATTGTTGTAAATCAACCACGTTTAACAACTGAAGATGATCAAGTTGTGACTTTCAATATTGAAGGAGAAATGGAAATGGTCAATGCAGATCCAGATGATCAAGATGCTGATGCCTCTGAAGatacaaaattatacattgCAGATTTAAAAGACCatgttattattcaaaatactgaTGAGGGAACAGTAATTGTTGGTGCTGCCACTTCTGATGGAAATGAAATAGATCAAGATGCTGTTGAACATTTAATCATTGATGGACAAgTTCATTATACTACACGTGGTGAAGATGGAGGTGATGAAGTACATGAAATTAATGAAGGAGATTTAACAAGAGAACAAATGCTGAATGAAAATGATGAATATGAAGAAGTAATAACCGATCAACTTGTTGAAGAAAATTCACAAATGATTCAATCATCTAGACCTATACATTTAGTTCAAGTGAGATTAAATAATAGTGATGGTGAAGAACAAGATGCATGGGTAAATTTAGTTACagaataa
Protein Sequence
MSQLNTSVRDNPHCLICNSRVGVSTRNSVQVFNKQVLTCSERPMDTIISGVVGKVVKEDNVQSHLICKKCYKLFLEYDELETRSAEIKNEIVTNYKRTLSKYKHSSSVEGENELKEITIKKEPEEEEDEEQVKDSYELGKKISNSILQKKDEQISNEQKQISNKPTESTEMGDIEEQLEKMHASAEDMEVDEIVERVEVIQDADECTENVPQISIPETSDADDTSHSFHGFTQSDEPVDAGAIDNSDDSDYQPPLILEVIQNGESNNEKQNGEDNTAALLEAAAMAEQTIQEDGSLVYNVKIEPDMMYDDVKQLMRRKVGVRKLLKPKNDEYLEPIVSRDGALYTCLICDREEKAVGDGKSMMLHVKTVHDLRVYICDVCGDDFRKRNELSLHLDEHVATEEGDFQCEICNRIFCNLRLFRIHKRMHYPQSKLWTCETCGKRYSSRNLLDEHINTHTGIRPYVCNVCSKDFASKYTFRAHMKTHEVRPRPFSCSQCEKTFLSQQNLTQHERTHTGIKDYVCHLCGKAFGSPHNLEVHSIVHTGYKPFICRTCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCRECGKGFKRRRLLDYHMKAVHTGERPFKCNVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYAHMETQGHLNDTIVVNQPRLTTEDDQVVTFNIEGEMEMVNADPDDQDADASEDTKLYIADLKDHVIIQNTDEGTVIVGAATSDGNEIDQDAVEHLIIDGQVHYTTRGEDGGDEVHEINEGDLTREQMLNENDEYEEVITDQLVEENSQMIQSSRPIHLVQVRLNNSDGEEQDAWVNLVTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01050563;
90% Identity
iTF_01050563;
80% Identity
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