Basic Information

Insect: Acanthacorydalis orientalis
Gene Symbol: -
Assembly: GCA_034766995.1
Location: CM068318.1:27762994-27764121[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.3e-06 0.00019 22.9 2.5 1 23 6 28 6 28 0.97

2 9 1.3e-06 0.00019 22.9 0.7 1 23 37 59 37 59 0.97

3 9 3.7e-06 0.00053 21.5 0.3 2 23 66 87 65 87 0.96

4 9 3e-09 4.3e-07 31.2 1.5 1 23 93 115 93 115 0.98

5 9 6.9e-08 9.7e-06 26.9 3.3 1 23 121 143 121 143 0.99

6 9 8e-07 0.00011 23.6 1.7 1 23 149 171 149 171 0.99

7 9 1.8e-05 0.0025 19.3 0.3 1 23 177 199 177 199 0.94

8 9 2.3e-05 0.0032 19.0 0.1 5 23 209 227 206 227 0.93

9 9 1.2e-06 0.00017 23.0 0.1 1 23 233 255 233 255 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.3e-06	0.00019	22.9	2.5	1	23	6	28	6	28	0.97
2	9	1.3e-06	0.00019	22.9	0.7	1	23	37	59	37	59	0.97
3	9	3.7e-06	0.00053	21.5	0.3	2	23	66	87	65	87	0.96
4	9	3e-09	4.3e-07	31.2	1.5	1	23	93	115	93	115	0.98
5	9	6.9e-08	9.7e-06	26.9	3.3	1	23	121	143	121	143	0.99
6	9	8e-07	0.00011	23.6	1.7	1	23	149	171	149	171	0.99
7	9	1.8e-05	0.0025	19.3	0.3	1	23	177	199	177	199	0.94
8	9	2.3e-05	0.0032	19.0	0.1	5	23	209	227	206	227	0.93
9	9	1.2e-06	0.00017	23.0	0.1	1	23	233	255	233	255	0.98

Sequence Information

Coding Sequence: ATGCAAAATAAACCACACATTTGCCGAGAATGTGGTAAAGGATTTGCAGAATCACATGCTCTTACTAAACATATGCGCAGACATACGGGAGAACCACGTGAAAAACGTCACATTTGTACTATTTGTGGACAGGGGTTTTCAGAaccattctatttaaatgtacatatgcGCAAACATACAGGAGAACGGCCTTTAATGTGTTCATCATGTGGAAAGTCTTTTGCTGACCCTCGTTCACTTAAAGCGCACAACATGACACATACTGGTGAAAAACCACATAAATGTCAAATTTGTGGaaaggCATTTACACAATCAGTTAATCTCACAAAACATATTCGTGTTCACACTGGAGAAAAGCCTTATGTTTGTTCAGAATGTGGAAAATGTTTCACACAATCATCTAGTTTAGATAAACATTCACGTACTCATTCTGGGTTAAGACCATATCAGTGTTCAGTTTGTTCTAAATCTTTTGCTGAAAAAGGAACTCTTGTCCATCATCTTCGAACACATACAGGGGAAAAGCCATATATTTGTTCAACTTGTGGTAAAGCATTTGCTAGTTCAGGCGAACTAAAATTGCATGATAGAAAACACACAGGtgtcaaaaaaaatgtgtgtatcaCTTGTGGGAAAGATTTTGCTACACCTAGTAACTTGCTCGTTCACACTAGAATTCACACAGGTGAAAAACCTTATTCATGTGTGGTTTGCGGTAGAGCATTTGCAGAAAAAGGTTCTCTTAAAAAGCATGTAAGAATCCATGGAAAACAACAAGTGTTAATTGACAATACAAAGTGTTTATCATTCCATGtttga
Protein Sequence: MQNKPHICRECGKGFAESHALTKHMRRHTGEPREKRHICTICGQGFSEPFYLNVHMRKHTGERPLMCSSCGKSFADPRSLKAHNMTHTGEKPHKCQICGKAFTQSVNLTKHIRVHTGEKPYVCSECGKCFTQSSSLDKHSRTHSGLRPYQCSVCSKSFAEKGTLVHHLRTHTGEKPYICSTCGKAFASSGELKLHDRKHTGVKKNVCITCGKDFATPSNLLVHTRIHTGEKPYSCVVCGRAFAEKGSLKKHVRIHGKQQVLIDNTKCLSFHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -