Aori001650.1
Basic Information
- Insect
- Acanthacorydalis orientalis
- Gene Symbol
- -
- Assembly
- GCA_034766995.1
- Location
- CM068313.1:21788374-21796229[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0046 0.64 11.8 8.0 1 23 10 32 10 32 0.98 2 23 0.00015 0.021 16.4 2.1 1 23 38 61 38 61 0.96 3 23 0.00017 0.024 16.2 0.5 1 23 66 88 66 88 0.97 4 23 6.2e-07 8.7e-05 23.9 1.5 1 23 98 120 98 120 0.99 5 23 0.0015 0.21 13.3 1.9 1 23 126 148 126 148 0.96 6 23 1.3e-06 0.00019 22.9 2.6 2 23 155 176 154 176 0.97 7 23 6.1e-06 0.00085 20.8 0.9 3 23 184 204 182 204 0.97 8 23 3.9e-05 0.0054 18.3 3.0 1 23 210 233 210 233 0.98 9 23 0.00076 0.11 14.2 0.8 2 23 267 288 266 288 0.98 10 23 1.3e-05 0.0018 19.8 3.1 1 23 303 325 303 325 0.98 11 23 0.00015 0.021 16.4 0.2 1 23 331 353 331 353 0.97 12 23 1.3e-07 1.8e-05 26.1 1.1 2 23 360 381 359 381 0.97 13 23 1e-06 0.00015 23.2 3.4 1 23 387 409 387 409 0.99 14 23 3.2e-05 0.0045 18.5 0.8 1 23 415 438 415 438 0.98 15 23 0.0075 1.1 11.1 8.0 1 23 476 498 476 498 0.97 16 23 0.0034 0.48 12.1 3.1 1 23 504 526 504 526 0.97 17 23 0.00016 0.023 16.3 1.8 1 23 536 559 536 559 0.95 18 23 0.0005 0.071 14.8 2.3 1 23 564 586 564 586 0.98 19 23 0.0013 0.19 13.4 2.8 1 23 596 619 596 619 0.98 20 23 0.0015 0.22 13.2 3.1 2 23 626 647 625 647 0.96 21 23 1.2e-05 0.0017 19.9 4.0 2 23 654 675 653 675 0.98 22 23 1.2e-06 0.00016 23.1 2.4 1 23 681 703 681 703 0.98 23 23 0.001 0.14 13.8 1.4 1 23 709 732 709 732 0.98
Sequence Information
- Coding Sequence
- ATGAGACACCATGAAGCAAAAAGAACTTTTCATTGTGACATTTGTTCTAAATCATTTACAAGCCAAACGTACCTGACGTGTCACAGAAGAAGACATTTTGACGATTTTAGTTTCTTTTGTGAGATGTGCCCTAAAGGATTTCACACGAAAAAAGAACTTGCGACGCATATTCAATCGAAGCACGATTCTTCTAAATTCGTTTGTGAAGTTTGCAGCAAATCTTATTCTACAATTTACACGTTCCGGGCTCATGTCGTAACACATGATAAAGATTATAAGGTGGAAAGGAAGTATAAATGTGAATATTGTGATAAATCATTCATACAGAATTATTTATGGCAAAACCATTTAAAAATGCACACTGGAGAATCAATACATATATGCTATGTTTGTGGTAAAAATTTATCTTCAAGACACGGCCTAAGTCAACATCTTATGGTACATTCAGGTGCTAAGCCACTGAAATGTGAGGATTGTGGAAAATGTTTTGCAAAACGTACGTCGTTGAGAGTCCATCGACGAATTCATACTGGTGAAAGACCATACGGTTGTGAACAGTGCGGAAAACGATTTACCCAACGTAGTAGTTTCGTCATTCATTTGAGATATCATAGTGGAGAAAGACCATATCGTTGTCATTTGTGTGAAGCAAGTTTTGTTAGTAAATATCTACTCACAACTCATCAAAAAAGCCAACATGCAATTGTAACCGCCACACAATCGGATGAATTATCAGGATGTTATTCTCGGGCGGAATTAGCTGCGCATATAAAAGATAAACACGAACCAGGAACGAACCAATGTGAAATTTGTTCGAAGTTATTGTCTTCGAGTCGGGCTCTTCGTAGTCACTTGAAAACGCACAATAAAATTCACGCGAGAATCAAAACAATTCCTGAAAAAAAATTCCAGTGCGAATTATGCGATAAAGCTTTCGTATATAGACGAAGCTTACATCAGCATATGAAAAATCATACAGGagaaatcagttttatatgTGATATATGTGGAAAGTATCTAACTTCTAACGTTAGTCTCAGAGATCATCAGTTATTACATACAGGTGTTAAACCTATAAAATGTGACGAATGTGGAAAGAAATTTAGTAAGAAGAGCACTTTAATTGTGCATCAACGGTCTCACACTGGAGCAAAACCTTACAAGTGTACAGAATGTGCAAAATGTTTCACTCAAAGCAGTACATTAGTAATTCATATGCGATATCATAACGGAGAACGACCTTATCGCTGTGGGCTTTGTGATCTCGGTTTcgtcagtaaatatttattacgtaCGCATCAGAAAAGTCAACATGCTATTGTTACCGTTGATTTCAAAGATTTGAACGAGTATATTAATTCAGAATTTACAAAGAAACATGAAATGTGTTCTAAGTTAAGAATGGAAAATAGgcctaataatttattcaaatgtttacaTTGTTCTAAAATATTCTCGAGACACCATAAATTGAGATTGCATAAAGCTGTCCATTCTGAAGACAGGCCACACAAATGCCGACTCTGTTCAAAAGCATTTAAATTTAGTACCGCTCTAGATAGTCACCTGAAGTTGCATAGACGAATACATATGAAAGCGTACAGTTTCTTTTGCGAAATATGCGGTAAAGGGTGTTATGTTCTTTcacaattaaataatcatatgaAAGATAAACATAATACAGCCGAATTCGTATGTAAAAAATGCAGTGCAGTTTTCACGAGTTACTATCGATTTAAAGTACATCTTCAAACACACAACACTGAAAACGTAACGAAAAGTCTCTACAAATGTCAATTTTGCGATAAATTATTTAGCGTTAAATCTCTGCGAACTGAGcacattaaaagaaaacacaTGGGAGAGAGGCGATGTGTTTGTGATATTTGTGGTAAAAAAGTATCATCTATTACAACGCTTAATCATCATAAACTCACGCATTCAGGTGAAAAACCGGTTAAGTGTGATATTTGTACCAAATGTTTTGCAACTAagcaaacattaaaaattcataagcGAACGCATACAGGAGAGAAACCATATAATTGTGATCAGTGTGGAAAAAAATTCACTCAAAGAAGTAGTCTCATGGTACATAAACGGTATCATACAGGAGAACGACCATATCAGTGCACTTCTTGTAGCGCATCATTTGTTACGAAAACGTTAATGAATATTCATCTGAAGAAACGGCATTCTGTTATTTCTGTCACTCcgctttaa
- Protein Sequence
- MRHHEAKRTFHCDICSKSFTSQTYLTCHRRRHFDDFSFFCEMCPKGFHTKKELATHIQSKHDSSKFVCEVCSKSYSTIYTFRAHVVTHDKDYKVERKYKCEYCDKSFIQNYLWQNHLKMHTGESIHICYVCGKNLSSRHGLSQHLMVHSGAKPLKCEDCGKCFAKRTSLRVHRRIHTGERPYGCEQCGKRFTQRSSFVIHLRYHSGERPYRCHLCEASFVSKYLLTTHQKSQHAIVTATQSDELSGCYSRAELAAHIKDKHEPGTNQCEICSKLLSSSRALRSHLKTHNKIHARIKTIPEKKFQCELCDKAFVYRRSLHQHMKNHTGEISFICDICGKYLTSNVSLRDHQLLHTGVKPIKCDECGKKFSKKSTLIVHQRSHTGAKPYKCTECAKCFTQSSTLVIHMRYHNGERPYRCGLCDLGFVSKYLLRTHQKSQHAIVTVDFKDLNEYINSEFTKKHEMCSKLRMENRPNNLFKCLHCSKIFSRHHKLRLHKAVHSEDRPHKCRLCSKAFKFSTALDSHLKLHRRIHMKAYSFFCEICGKGCYVLSQLNNHMKDKHNTAEFVCKKCSAVFTSYYRFKVHLQTHNTENVTKSLYKCQFCDKLFSVKSLRTEHIKRKHMGERRCVCDICGKKVSSITTLNHHKLTHSGEKPVKCDICTKCFATKQTLKIHKRTHTGEKPYNCDQCGKKFTQRSSLMVHKRYHTGERPYQCTSCSASFVTKTLMNIHLKKRHSVISVTPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -