Basic Information

Insect: Abscondita terminalis
Gene Symbol: ap_3
Assembly: GCA_013368085.1
Location: JABVZW010003138.1:569209-579872[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.077 3.9 8.3 2.7 1 19 306 324 306 327 0.94

2 8 0.0069 0.35 11.6 1.8 5 22 335 352 333 355 0.89

3 8 0.00088 0.045 14.4 0.5 1 21 399 419 399 420 0.95

4 8 2 1e+02 3.8 3.2 1 23 428 451 428 451 0.94

5 8 0.0038 0.19 12.4 0.1 2 20 468 486 467 488 0.94

6 8 9.1e-05 0.0046 17.5 0.8 1 21 506 526 506 527 0.96

7 8 0.0002 0.01 16.4 1.6 1 21 564 584 564 585 0.95

8 8 0.0017 0.087 13.5 0.4 3 23 595 615 594 615 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.077	3.9	8.3	2.7	1	19	306	324	306	327	0.94
2	8	0.0069	0.35	11.6	1.8	5	22	335	352	333	355	0.89
3	8	0.00088	0.045	14.4	0.5	1	21	399	419	399	420	0.95
4	8	2	1e+02	3.8	3.2	1	23	428	451	428	451	0.94
5	8	0.0038	0.19	12.4	0.1	2	20	468	486	467	488	0.94
6	8	9.1e-05	0.0046	17.5	0.8	1	21	506	526	506	527	0.96
7	8	0.0002	0.01	16.4	1.6	1	21	564	584	564	585	0.95
8	8	0.0017	0.087	13.5	0.4	3	23	595	615	594	615	0.99

Sequence Information

Coding Sequence: ATGGGAAACATTGCATGGGGTTACTTAAACTACATTAGTCAATCATATTGCATATTGTTTATACAGCTCAattttttagatacatttttttgcacaacCAAACTAGGACGACCTACCAAAAACGAGGCTCCTTTTCGTTGTACGAGGTGCGTTGCTTCGCAATCCGGTAAGATAATCTCTCCTCCGCCAACTTCTTACGAGAATCTTAATAAAACTAAACGATTGAGAACTACGTTCCACGACAAGCAGTTGAATGCGTTGAAAGCTTTCTTCGTGTATAACAAAAAACCTGACGCTGACCAGTTACTCAAGCTCTCACAAAGTATTGGTTTACCAGTGAGGGTTTTGCAAGTTTGGTTTCAAAATGCAAGAGCGAAATGGAAAAGAATCACTCGAACTGATGGAGTACCTTCTCAGGAAGAACAAATGAAAACAAGTACCGTTCCTTTACTTCCTTTTTCGCAACTTGGGCATCATTCGTTTCCAAACGCAGCGTTTTCGAATATAACTGGAACTTTTCAAAATGACACGATCAAACTTTTATTGGGATTGCAAAATGATATGACCGATGTAAAGAGTCTTTTGGTACGTGTTCTTGATCATGCGGGATCGTCAGGCACATTTTCTGCTTTAACTGTATTTCCATTAAAAACCATCGAAGAAATGGACAAAGCTGAAGACCAGTTACGTTctgaagaattttttgaaaaatacGCTAACGTAATTTCTCGACTCGGTGGTAGCAGCGAAGCCAAAATTGTAAACAACATTTGTTCTTATGTGTTTCATCACGCCTTGGCTCAACAAATCAGATTGACCGCAAGTAGTGGCAAACGTGCCATCGATAATACAAAATTGCTTGCATTAATTTGTGgtGGGATTATATTACAATCACTGGTTCCTTTGGAAGGCGATTTCGCGTGCGCACGGTGTACAAAACGgtataagtacaaaaaaagtttagtgCGACACTgCATGACCGGAATTGAAACGTATGTTTGTACTTGCGGAAAAGAGTACAAATACAAGAAGACTCTAATTCGACACCAGCGTTATGAATGTCACCGAGAAAGATTGTTCGGTTGTCCCCATTGCAGCTATAGAGCTTTTCAGAAAGGCACTTTAAAATGCCATGTAGCTAAAATTCATCACctattaattggaaaaaattGGGAATCTTATTCAAAAACTTCGTATCCTTGCGGGCAGTGTACAAAAAAGTATGGATCGAAAACCGCTTTAAATCGACATTTGAAGTACGATTGCGGCAAAGAACCCATGTTTAGATGCCTTCAATGTCCGTATAGAGCGCATCAAAAAATACATGTtcaaaaacattacataaatgtacatttcaaaaaatgtgacaaatctcaagtttGTAAATCCGAAGACAAATTGGAATGCCAAGTTTGTAatagaaagtacaaaaatattacaactcTTCGAGCACATATAGCGTTAGACTGCGGAAAAGaacgaaaatttttatgtGTACAATCAACCTCAAATCATTTTCAGTGTTCAGTTTGTGggcgaaattataaatacaagcAATCGCTTCAGCTTCACATAAAAAATGAATGCGGAAAAGAACCGAAGTTTTTTTGTACAGTTCCCGACTGTGGttataaaagATTATCTTATGAAAATATTAAGCGCGATGGCAATATTATGAACGGTTATAAATTCGCTTGTCCGACATGCCAAAAATTCTACGTTCACAAAAAGACTTTAAGTCGGCACATACGTCAAGAATGTGGAAAAGAACCAGATTTGCTATGTCCTATGTGTCCCTACAGAGCAAGAAGACTCTACGTACTTAAGTCACACATGAAAACTCATACTCATGTATTCAATTGA
Protein Sequence: MGNIAWGYLNYISQSYCILFIQLNFLDTFFCTTKLGRPTKNEAPFRCTRCVASQSGKIISPPPTSYENLNKTKRLRTTFHDKQLNALKAFFVYNKKPDADQLLKLSQSIGLPVRVLQVWFQNARAKWKRITRTDGVPSQEEQMKTSTVPLLPFSQLGHHSFPNAAFSNITGTFQNDTIKLLLGLQNDMTDVKSLLVRVLDHAGSSGTFSALTVFPLKTIEEMDKAEDQLRSEEFFEKYANVISRLGGSSEAKIVNNICSYVFHHALAQQIRLTASSGKRAIDNTKLLALICGGIILQSLVPLEGDFACARCTKRYKYKKSLVRHCMTGIETYVCTCGKEYKYKKTLIRHQRYECHRERLFGCPHCSYRAFQKGTLKCHVAKIHHLLIGKNWESYSKTSYPCGQCTKKYGSKTALNRHLKYDCGKEPMFRCLQCPYRAHQKIHVQKHYINVHFKKCDKSQVCKSEDKLECQVCNRKYKNITTLRAHIALDCGKERKFLCVQSTSNHFQCSVCGRNYKYKQSLQLHIKNECGKEPKFFCTVPDCGYKRLSYENIKRDGNIMNGYKFACPTCQKFYVHKKTLSRHIRQECGKEPDLLCPMCPYRARRLYVLKSHMKTHTHVFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00003649;
90% Identity: iTF_00003649;
80% Identity: iTF_00003649;