Ater015716.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002692.1:67282-76786[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0025 0.13 13.0 1.4 2 23 79 100 78 100 0.96 2 13 0.012 0.59 10.9 0.3 1 22 160 181 160 181 0.96 3 13 0.015 0.77 10.5 4.0 1 23 226 248 226 248 0.97 4 13 0.042 2.1 9.1 1.7 1 23 254 276 254 276 0.95 5 13 0.00012 0.0064 17.1 1.7 1 23 282 304 282 304 0.99 6 13 0.0027 0.14 12.9 2.2 2 23 482 504 481 504 0.95 7 13 4.3 2.2e+02 2.8 0.2 2 23 512 533 511 533 0.90 8 13 0.023 1.2 9.9 4.7 1 23 539 561 539 561 0.97 9 13 0.0071 0.36 11.6 1.8 3 23 569 589 567 589 0.95 10 13 0.031 1.6 9.6 1.6 1 23 595 617 595 617 0.98 11 13 0.0023 0.12 13.1 1.8 1 23 623 645 623 645 0.97 12 13 0.0022 0.11 13.2 1.4 1 23 651 673 651 673 0.98 13 13 9.3e-05 0.0047 17.5 1.3 1 23 679 701 679 701 0.98
Sequence Information
- Coding Sequence
- ATGGAATTCGATTCAAAAGTAATACAAgCTCAATGCGTGACCGAAAATCCACGTAACAAAATTAAGATGGAAATCGATGAGACGCATCgattatacataaaaaacgaaaacgttACGAAAGAAGAAGTTAAAGTGGAGTTTACGGAAGATACAATTAAGACGGAGGAAATTGTCGAAGACGATTGTTTGTCGTTTAATATCGACATGCCTACGTGCATTGAAGAATGTATTTTGTATTGCGACCAATGTAATTATCGCACAAACGACAAACGTAATTTAACCGATCATGTTTTTACACATCGTTTCGAATGCAGTTACACAACTCTCGATAATTCTACGTTAATAACTCATAAGCGTAACGTATCATGTAACGTTTGTAGTTTTACTTGTTTAGGAGTTGATGTACTCAATGATCATATGTGTATACACAAAGAGGTTTCTATGAAAGAGGAACCATCCAAAATAAGCGAAGATTTATTTGAATGCGACGATTGTCTTTACAGCACAAATAGTAAGACCGCCTTAAAACTTCACGTGAAAACGTGTTCTAAAGTAAAATGCTTAAGCACTCAAATGCTTCGTAAACACATAAAGTGCTGTGACAAATGCAGCTACCAAACTTACTACGATCACAAATTGACGGAACACAAAGTGATGCATTCCGGAGAAAAACCATTCGAATGCACTTCGTGCGATTACAGCTCGCACAGCCGAAGTTACTTAAACAAACATTCGAAGATACACACGAGCGAACGTAAATttagctgcgacaaatgcgactacaaaacgTTCAGCAAAAATCGTTTGACCAACCACGAAATAGTTCATTCTGaacgaaaaacatttaaatgtagtttgtgCGATTTCAGCACCATCCGCTCGTGGAACTTAAAACTACATTTGAAGAAGCATTCGGGCGAATTCGGAacaaatgcgactacaaaaccATCGTGTGAAAACGATGAACAAAACGTACAGCAAGTCATTAAAAACGTACACTTGGAGAAATATATTATAATGAAATATTACGCAAAATTGGATTATTTGCACAATTTAGCTTCACAGAAGGATCTAAAATTCAAGGCATGCAGTGAATGTAAGCGCGAAGAAAGCAACGAATTTCAAACACTCCCTTATAttgttaaagaagaaattaaagaggAGTTTCTGGTAGACTCGATTAAGACGGAAGGAATCGATGAAGACCATTCATTCGATACCGTATGTGACAACAaacaatatcaatttaaaagCGATTATGATAGTTTTCaccaaaaaaacattgatttattcGACAAGCTTGCGCATGTTAGTGAAGATTTATTCGAATGCTATTGCTGTGGTTATAAGACGGACagcaaatttactttgaaatttcatacgAGGACGTGTATAAACGGAGAAATCGCCCAATCGAGATTATTGAAACAAAGcgaaataaataagtgcgataAATGCGACTACTCTACATCTAAATCGAGATATTTACGTCAACACTTGTTTCGCATACATGGCGAAACTAAAACGATGCTCAAATGCAAATTATGCAACTTTCTTACTTATAACGAATCTAGATTGGCGGTCCACGAAATCGGCCACACCGTAAAGAAAGTATTCAAATGTAGTTCGTGCGATTATCAAAGTAAATATTCGAGCCATTTGAAAGAACACACAGTTAAACACTCCGGTGTTCTCCCCTTCGGCTGCGACAAATGCAAATACCGAACGTACTCCAAATCTTCATTGACGAGACACAAAGTGGTTCATTCCGATGATAAACCGTTTAAATGCGTTTTGTGCGATTTCACTACTAAACGTACGAGTATATTAAAAGTACACTTGCAGAGACATTCGGGTGAACGTAATTTTAGCTGCGATAATTGCGAATATAAGACGTTCTCGCAAAGCACCTTGACGATACATAAAAGAATTCATTCcggaaaaaaaccttttaaatgcAATTCGTGCGACTATCGAAGTAAATACGTCAGCGATTTAAAAGTACATACGAATATACATTTGTGCGAACGTATTTTTAGTTGCGACGTTTGCGAttacaaaagttattataaaagcAATTTGAACGCGCACAAAAGAATCCACTCTGAAGATAAATCTTTCGAAATCAACTACAAAATGAacatgaaacgaaaaaaaattaactccaaaataaaaccttttaaatgTGATTCGACTGATTACGACGATTCGAATATAATACGTTCTGCTGAAGGTGATCTTAGATTCGACAAGGATCCGAAAGTGGTGACCGAACGTAAAACAAGGTACAAGTGTACGCTAATTAGCGtttctaaattagaaaaaggATAA
- Protein Sequence
- MEFDSKVIQAQCVTENPRNKIKMEIDETHRLYIKNENVTKEEVKVEFTEDTIKTEEIVEDDCLSFNIDMPTCIEECILYCDQCNYRTNDKRNLTDHVFTHRFECSYTTLDNSTLITHKRNVSCNVCSFTCLGVDVLNDHMCIHKEVSMKEEPSKISEDLFECDDCLYSTNSKTALKLHVKTCSKVKCLSTQMLRKHIKCCDKCSYQTYYDHKLTEHKVMHSGEKPFECTSCDYSSHSRSYLNKHSKIHTSERKFSCDKCDYKTFSKNRLTNHEIVHSERKTFKCSLCDFSTIRSWNLKLHLKKHSGEFGTNATTKPSCENDEQNVQQVIKNVHLEKYIIMKYYAKLDYLHNLASQKDLKFKACSECKREESNEFQTLPYIVKEEIKEEFLVDSIKTEGIDEDHSFDTVCDNKQYQFKSDYDSFHQKNIDLFDKLAHVSEDLFECYCCGYKTDSKFTLKFHTRTCINGEIAQSRLLKQSEINKCDKCDYSTSKSRYLRQHLFRIHGETKTMLKCKLCNFLTYNESRLAVHEIGHTVKKVFKCSSCDYQSKYSSHLKEHTVKHSGVLPFGCDKCKYRTYSKSSLTRHKVVHSDDKPFKCVLCDFTTKRTSILKVHLQRHSGERNFSCDNCEYKTFSQSTLTIHKRIHSGKKPFKCNSCDYRSKYVSDLKVHTNIHLCERIFSCDVCDYKSYYKSNLNAHKRIHSEDKSFEINYKMNMKRKKINSKIKPFKCDSTDYDDSNIIRSAEGDLRFDKDPKVVTERKTRYKCTLISVSKLEKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -