Ater013453.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002556.1:145684-147794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0023 0.11 13.1 4.7 1 23 97 119 97 119 0.98 2 19 0.27 14 6.6 0.9 1 20 121 140 121 142 0.94 3 19 0.0086 0.44 11.3 1.0 2 23 200 222 199 222 0.95 4 19 3.1 1.6e+02 3.2 2.6 1 23 229 252 229 252 0.92 5 19 0.8 41 5.1 2.4 1 23 258 280 258 280 0.96 6 19 0.0002 0.01 16.4 1.2 1 23 286 308 286 308 0.97 7 19 0.01 0.53 11.0 8.1 1 23 314 336 314 336 0.98 8 19 0.027 1.4 9.7 2.7 1 23 342 364 342 364 0.97 9 19 0.00037 0.019 15.6 3.7 1 23 370 392 370 392 0.98 10 19 9.8 5e+02 1.7 1.1 13 23 410 420 399 420 0.84 11 19 0.0099 0.51 11.1 4.0 1 23 430 452 430 452 0.98 12 19 0.0028 0.14 12.8 1.4 1 23 458 480 458 480 0.98 13 19 0.052 2.6 8.8 1.6 1 23 486 508 486 508 0.97 14 19 0.0037 0.19 12.4 1.9 1 23 518 540 518 540 0.94 15 19 0.021 1.1 10.1 2.8 1 23 546 568 546 568 0.98 16 19 0.027 1.4 9.7 4.7 1 23 574 596 574 596 0.96 17 19 0.05 2.5 8.9 2.5 3 23 608 628 606 628 0.97 18 19 0.0008 0.041 14.5 2.9 1 23 634 656 634 656 0.98 19 19 0.52 26 5.7 4.7 1 23 662 684 662 684 0.97
Sequence Information
- Coding Sequence
- ATGACCGAAATTACAGCACCCACATGCAATATTTGTGTGAATGAAATCAAACAAGATCCTGTATTGGATCTTAAGTTGAAGACCGAGTTTCCTCCGGAAGAGAACATCATCGAACGTCCTATCACATGCAAGGCGGAAGTGCAACAcgaaatcgtaataaaaaatgaaaacgaacCGGAACAATACTCGTCACCcatcaaaaaagaaatcgaTGAAGAATTTGTTGAGCACCGCGACGTGGTTGAAGGTAaacctttgttttttaaagacttCGAAGAACGTAACACTTTCTATTGTTACTATTGTGATTATTGCTCGGAAGACAAACACAATCTGGCTGTTCATATATTCACTCATCGTTACAAATGTGATCGTTGCAGTTACACAACGCCAGATGGTTGTGCGTTGAAGAGACATAAAGAAATTTGTGATTCTATTGTAGCCGAAGAGAAATACCAGCCGTTGCAACAAATAAGCGAAGACGTATTTGAATGTCACGAATGTCGTTAtacaacaaattgtaaaattacgtTGAAGTTTCACATGAAGGTCTGTTTAAATACTAAAGCTCGATTACAAAAACAGCTGCATCCAATTAAGTGCGAAAAATGTGAGTACTCGACttctaaagtaaattatttaacgcAGCACATGTTCCGTATACACGGCGAAGATACGCTGAAACACAAGTGCACGTTATGTAATAACTTCGCTACTTATAACAAATCGAGATTGTTAGCACACGTACAGAGGCACACGGGAAAGAAACCATTCCAATGTAACGTATGCGATTATCAACATATGTATTTGAGCCGCTTAAAAATTCATATGGTTAAACACTCCGGCGAGCAGTCCTTTCCGTGTACCAAATGCGACTACAAGGCAACTTCCAAATACACTTTGAAGAATCACCAAATAGTTCATTCTCAAGAAAGACCTTATAAATGCAGCGTCTGCGATTTTCGATGTAAACGCTTAAAACATTTGAAGATACACTCCAAGAAACATGCGAGTGAATACGCTTTCCGttgcgacaagtgcgactatAAAACTTACTTGAAACACGCTTTAATAAACCACAAATTAATTCATTCGGAGGAGAAGCCTTTTCAATGCAATTTGTGCGATTACGGTTGCAATTATTCGTACAGTTTAAAAATGCACATGCTCAAACACCGTGGGGATCAGCCTCTGTGCTGCGATAAGTGTGCTTATAAAACTTTATGCGCATCCGAATTAAAACGgcacaaaaaaattcatgtgCTTAAACAATCCGGTGAACGTTCCTTTTCttgcgacaaatgcgattacACAACATATTTCAAACGTTATTTGACaagtcacaaaaaaattcacaccgaacaaaaattattcaaatgcgATTTGTGCGATTACGGCACTAATTATTCGAGCAGCTTCAAACTGCACGTACTGAAACATTCAAGAGTCGAACCTTTTAGTTGCAACTTGTGCGATTTCAAAACTTACCTCAAAGCATCGTTTAACCGGCACGAACAAATCCATGTCTTCGAACACACAGGCGAGTGTTCCTTTTTCTGCGATAAATGTGATTACAAAACCTacaccaaaattaatttgatgcgACACAAGGTAATTCATTCtgaagaaaaaccatttaaatgcacCCAATGCAATTATGGTAGTTATTCTTCGAGCAGGTTAAAACTGCACACGCTGAAACATTCCGGGGAACATTCTCACAACTGCGATAAGTGCAATTATAAAACTTATTCAGCATATGACTTTAACCAGCATCAAAAAAACCACACGCTTAAAGAATCCGGCGAGCGTCCATACGGTTGCGACAATTGCGATTTTAAAACCCACTCGAAACCGTCTCTGAGAAGTCACCGAAGAATTCACAACGAAGAGAAACCGTTCAAGTGTAAGTTATGTGATTATGGTAGTAATTATTCGAAGTATTTAAAAACGCATATGCTTAAACACTCTGGTGAGCGTTCATTTtgctgcgacaagtgcgactacaaaacgtATGCCGAACGTTATTTGAAgaaccacaaaaaaattcactcccaataa
- Protein Sequence
- MTEITAPTCNICVNEIKQDPVLDLKLKTEFPPEENIIERPITCKAEVQHEIVIKNENEPEQYSSPIKKEIDEEFVEHRDVVEGKPLFFKDFEERNTFYCYYCDYCSEDKHNLAVHIFTHRYKCDRCSYTTPDGCALKRHKEICDSIVAEEKYQPLQQISEDVFECHECRYTTNCKITLKFHMKVCLNTKARLQKQLHPIKCEKCEYSTSKVNYLTQHMFRIHGEDTLKHKCTLCNNFATYNKSRLLAHVQRHTGKKPFQCNVCDYQHMYLSRLKIHMVKHSGEQSFPCTKCDYKATSKYTLKNHQIVHSQERPYKCSVCDFRCKRLKHLKIHSKKHASEYAFRCDKCDYKTYLKHALINHKLIHSEEKPFQCNLCDYGCNYSYSLKMHMLKHRGDQPLCCDKCAYKTLCASELKRHKKIHVLKQSGERSFSCDKCDYTTYFKRYLTSHKKIHTEQKLFKCDLCDYGTNYSSSFKLHVLKHSRVEPFSCNLCDFKTYLKASFNRHEQIHVFEHTGECSFFCDKCDYKTYTKINLMRHKVIHSEEKPFKCTQCNYGSYSSSRLKLHTLKHSGEHSHNCDKCNYKTYSAYDFNQHQKNHTLKESGERPYGCDNCDFKTHSKPSLRSHRRIHNEEKPFKCKLCDYGSNYSKYLKTHMLKHSGERSFCCDKCDYKTYAERYLKNHKKIHSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -